Setting of multiple bam files of the IDBAUD co-assembly contig.fa

[B-1991-ing]

Hi Oskar,

For the binning of the SPAdes individual assembled contigs.fasta, I directly set the location of each contigs.fasta and its corresponding *.bam file. It runs perfectly.

config25 copy.yaml.txt

But, for the IDBAUD coassembled contig.fa, if I directly run set the location of the contig.fa and one *.bam file in each config.yaml file, it gives us no bins.
config25.yaml.txt

I saw the similar question - Multiple bam files from co-assembly? #19, so should I put the multiple *.bam files in the one config.yaml file?
metagenomics_alignment: "1_raw_unique_sort.bam, 2_raw_unique_sort.bam, 3_raw_unique_sort.bam"

Best,

Bing

[ohickl]

Hi Bing,

if I directly run set the location of the contig.fa and one *.bam file in each config.yaml file, it gives us no bins.

I am not sure, what you mean by that, but you can do e.g.: metagenomics_alignment: "path/to/bam/files/*_raw_unique_sort.bam"

Best

Oskar

[B-1991-ing]

I am not sure, what you mean by that, but you can do e.g.: metagenomics_alignment: "path/to/bam/files/*_raw_unique_sort.bam"

Yeah, this is what I want. Thank you very much Oskar.