From ec578706833ed41526fbadfe8d1284482b4e9b48 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Marek=20Wiewi=C3=B3rka?= <marek.wiewiorka@gmail.com>
Date: Wed, 12 Jul 2017 18:02:14 +0200
Subject: [PATCH] Fix to Jenkinsfile to enable running R tests in a Docker
 container (#31)

---
 Jenkinsfile | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index eb4d109..8e0dbbf 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -5,8 +5,7 @@ pipeline {
         stage('Test R code') {
                     steps {
                         echo 'Testing R code....'
-                        sh "cd R/tests && Rscript run_tests.R"
-                    }
+                        sh 'docker run -i --rm --network="host" -w="/tmp" -v $(pwd | sed "s|/var/jenkins_home|/data/home/jenkins|g")/R/tests:/tmp zsibio.ii.pw.edu.pl:50009/zsi-bio-toolset Rscript run_tests.R'                    }
                     post {
                       always {
                         junit '**R/tests/*.xml'