From 102ffe622b2fe06eb9544787b562702aff53f424 Mon Sep 17 00:00:00 2001 From: Guangchuang Yu Date: Thu, 7 Nov 2024 13:38:44 +0800 Subject: [PATCH] update citation --- DESCRIPTION | 2 +- NEWS.md | 15 ++++++---- inst/CITATION | 81 ++++++++++++++++++++++++++++++++------------------- 3 files changed, 61 insertions(+), 37 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index b6f0c13..27f6ce5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: clusterProfiler Type: Package Title: A universal enrichment tool for interpreting omics data -Version: 4.15.0 +Version: 4.15.0.001 Authors@R: c( person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0002-6485-8781")), person(given = "Li-Gen", family = "Wang", email = "reeganwang020@gmail.com", role = "ctb"), diff --git a/NEWS.md b/NEWS.md index 80fb8ad..bc335bc 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,9 +1,3 @@ -# clusterProfiler 4.14.0 - -+ Bioconductor RELEASE_3_20 (2024-10-30, Wed) - - - +# clusterProfiler 4.15.0.001 + ++ add new citation (2024-11-07, Thu) + - + +# clusterProfiler 4.14.0 + ++ Bioconductor RELEASE_3_20 (2024-10-30, Wed) + # clusterProfiler 4.13.4 + re-export `DOSE::enrichDO()` and `DOSE::gseDO()` (2024-10-01, Tue) diff --git a/inst/CITATION b/inst/CITATION index c1c8c5d..7ed73da 100644 --- a/inst/CITATION +++ b/inst/CITATION @@ -1,35 +1,56 @@ citHeader("Please cite S. Xu (2024) for using clusterProfiler. In addition, please cite G. Yu (2010) when using GOSemSim, G. Yu (2015) when using DOSE and G. Yu (2015) when using ChIPseeker.") -citEntry(entry ="ARTICLE", - title = "Using clusterProfiler to characterize multiomics data", - author = c( - person("Shuangbin", "Xu"), - person("Erqiang", "Hu"), - person("Yantong", "Cai"), - person("Zijing", "Xie"), - person("Xiao", "Luo"), - person("Li", "Zhan"), - person("Wenli", "Tang"), - person("Qianwen", "Wang"), - person("Bingdong", "Liu"), - person("Rui", "Wang"), - person("Wenqin", "Xie"), - person("Tianzhi", "Wu"), - person("Liwei", "Xie"), - person("Guangchuang", "Yu") - ), - issn = "1750-2799", - url = "https://www.nature.com/articles/s41596-024-01020-z", - doi = "10.1038/s41596-024-01020-z", - journal = "Nature Protocols", - month = "Jul", - year = "2024", - pages = "", - textVersion = paste( - "S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang,", - "Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, G Yu.", - "Using clusterProfiler to characterize multiomics data.", - "Nature Protocols. 2024, doi:10.1038/s41596-024-01020-z") +citEntry( + entry ="ARTICLE", + title = "Thirteen years of clusterProfiler", + author = c(person("Guangchuang", "Yu")), + url = "https://doi.org/10.1016/j.xinn.2024.100722", + doi = "10.1016/j.xinn.2024.100722", + journal = "The Innovation", + month = "Nov", + year = "2024", + volume = "5", + number = "6", + pages = "100722", + textVersion = paste( + "G Yu.", + "Thirteen years of clusterProfiler.", + "The Innovation. 2024, 5(6):100722") +) + +citEntry( + entry ="ARTICLE", + title = "Using clusterProfiler to characterize multiomics data", + author = c( + person("Shuangbin", "Xu"), + person("Erqiang", "Hu"), + person("Yantong", "Cai"), + person("Zijing", "Xie"), + person("Xiao", "Luo"), + person("Li", "Zhan"), + person("Wenli", "Tang"), + person("Qianwen", "Wang"), + person("Bingdong", "Liu"), + person("Rui", "Wang"), + person("Wenqin", "Xie"), + person("Tianzhi", "Wu"), + person("Liwei", "Xie"), + person("Guangchuang", "Yu") + ), + issn = "1750-2799", + url = "https://www.nature.com/articles/s41596-024-01020-z", + doi = "10.1038/s41596-024-01020-z", + journal = "Nature Protocols", + month = "Nov", + year = "2024", + volume = "19", + number = "11", + pages = "3292-3320", + textVersion = paste( + "S Xu, E Hu, Y Cai, Z Xie, X Luo, L Zhan, W Tang,", + "Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, G Yu.", + "Using clusterProfiler to characterize multiomics data.", + "Nature Protocols. 2024, 19(11):3292-3320") )