forked from mctools/ncrystal
-
Notifications
You must be signed in to change notification settings - Fork 0
/
README
133 lines (99 loc) · 6.55 KB
/
README
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
NCrystal : A library for thermal neutron transport in crystals
--------------------------------------------------------------
This is a source distribution of NCrystal, a library and associated tools which
enables calculations for Monte Carlo simulations of thermal neutrons in
crystals. Initial releases focus on scattering in single-crystals or
polycrystalline materials and powders, including both coherent elastic (Bragg)
diffraction and various models for inelastic scattering on phonons. Written in
C++, interfaces and infrastructure facilitate integration into existing
simulation frameworks such as Geant4 (https://geant4.cern.ch/) or McStas
(http://mcstas.org/), as well as allowing direct usage from C++, C or Python
code or via command-line tools. While the C++ library is designed with a high
degree of flexibility in mind for developers, typical end-user configuration is
deliberately kept simple and uniform across various applications and APIs - this
for instance allows tuning and validation of a particular crystal setup to be
performed in one tool before it is then deployed in another.
In addition to code and tools, the NCrystal distribution also includes a set of
validated data files, covering many crystals important at neutron scattering
facilities. For more information about the properties and validity of each file,
users are referred to the dedicated page at
https://github.com/mctools/ncrystal/wiki/Data-library .
Supporting compilation with all modern C++ standards (C++11 and later), the code
has no third-party dependencies and is available under a highly liberal open
source license (see NOTICE and LICENSE files for usage conditions and the
INSTALL file for build and installation instructions). NCrystal was developed in
close collaboration by Xiao Xiao Cai (DTU, ESS) and Thomas Kittelmann (ESS) and
was supported in part by the European Union's Horizon 2020 research and
innovation programme under grant agreement No 676548 (the BrightnESS project).
A substantial effort went into developing NCrystal. If you use it for your work,
we would appreciate it if you would use the following reference in your work:
X.-X. Cai and T. Kittelmann, NCrystal: A library for thermal neutron
transport, Computer Physics Communications 246 (2020) 106851,
https://doi.org/10.1016/j.cpc.2019.07.015
For work benefitting from our inelastic physics, we furthermore request that you
additionally also use the following reference in your work:
X.-X. Cai, T. Kittelmann, et. al., "Rejection-based sampling of inelastic
neutron scattering", Journal of Computational Physics 380 (2019) 400-407,
https://doi.org/10.1016/j.jcp.2018.11.043
The rest of this file gives a brief overview of the manners in which NCrystal
capabilities can be utilised. Further instructions and documentation, along with
the latest version of NCrystal, can be found at https://mctools.github.io/ncrystal/
Using the NCrystal installation from the command-line
-----------------------------------------------------
After installing NCrystal and having sourced the setup.sh script mentioned in
the INSTALL file, you can run any of the commands from the $NCRYSTALDIR/bin
directory, which includes example code as well as the ncrystal_inspectfile
command. Start by reading the usage instructions:
$> ncrystal_inspectfile --help
Assuming you chose to install data files, you can try to let NCrystal load one
of the data files found in $NCRYSTALDIR/data/ (or provide the absolute path to a
data file downloaded from https://github.com/mctools/ncrystal/wiki/Data-library)
and either dump the derived information to the terminal...:
$> ncrystal_inspectfile --dump Al_sg225.ncmat
... or plot polycrystalline cross-sections and sampled scatter angles with:
$> ncrystal_inspectfile Al_sg225.ncmat
Using the NCrystal installation from C++ (including Geant4), C or Python code
-----------------------------------------------------------------------------
If you wish to use NCrystal from Python code, there is no special setup needed,
beyond sourcing the setup.sh script mentioned in the INSTALL file. If you on the
other hand wish to use NCrystal from your compiled C++ or C code, you must put
the $NCRYSTALDIR/include directory in your include path, usually by providing
your compiler with an "-I$NCRYSTALDIR/include" flag, and make sure you link to
the NCrystal library in $NCRYSTALDIR/lib, usually via "-L$NCRYSTALDIR/lib
-lNCrystal" link flags. If using the NCrystal-Geant4 interfaces, you should also add
"-lG4NCrystal" to the link flags. Then, in your code you can access the relevant
APIs with with statements like:
#include "NCrystal/NCrystal.hh" // C++ code, core NCrystal
#include "G4NCrystal/G4NCrystal.hh" // C++ code, for Geant4 users
#include "NCrystal/ncrystal.h" // C code
import NCrystal ## Python code
Since NCrystal release v2.2.0, the recommended way for C/C++ projects to build
against NCrystal or G4NCrystal is to use CMake's find_package(NCrystal) or
find_package(G4NCrystal) as appropriate. This respectively provides CMake
targets NCrystal::NCrystal and G4NCrystal::G4NCrystal, which can be added as a
dependency to your own targets.
In the ./examples/ directory of your NCrystal distribution that you got after
downloading and unpacking the NCrystal source tar-ball, you will find small
examples of code using NCrystal. For C++/C and Geant4, there is currently no
documentation beyond the header files and examples. In the case of Python, there
is some integrated documentation via the usual "help" function, accessed with:
import NCrystal
help(NCrystal)
Using the NCrystal installation from McStas
-----------------------------------------------------------------------------
A sample component is provided for McStas, which embeds NCrystal material
simulations into simple shapes (currently boxes, cylinders and spheres),
allowing for highly realistic components representing samples, filters or
monochromators. The component is eventually intended to be contributed into the
standard McStas component library, but for now one must make it available by
running the following command in the directory from which McStas commands will
later be invoked:
$> ncrystal_preparemcstasdir
This sets up a symlinks to NCrystal_sample.comp file, as well as creating
necessary links to the NCrystal installation. It is then possible to use the
component in an instrument file, for instance setting up an r=1cm sphere with
powdered sapphire:
COMPONENT mysample = NCrystal_sample(cfg="Al2O3_sg167_Corundum.ncmat",radius=0.01)
AT (0, 0, 0) RELATIVE PREVIOUS
For more documentation about the NCrystal_sample component, run:
$> mcdoc NCrystal_sample