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ESPRESSO v1.5.0

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@EricKutschera EricKutschera released this 29 Jul 19:52
· 2 commits to main since this release
357ede5
  • Use Smith-Waterman in the C step instead of blastn
  • Add --blast option to use blastn as in v1.4.0
  • Use annotated gene coordinates to split reads into groups
  • Add --alignment_read_groups option to use alignment-based read groups as in v1.4.0
  • Refactor ESPRESSO Q to reduce memory usage
  • Add script to output corrected SAM files
  • Add parasail library and perl module to install script
  • Use sort info when checking single-exon reads against isoforms
  • Include the sample for each read in intermediate files
  • Update estimates of time and memory usage in the README