In this folder, there three file types:
- Barcode plate - CSV file that associates each plate to the correct platemap
- Platemap - TXT that contains the plate layout (e.g., what broad sample is in what well)
- Metadata - TSV file that contains all of the relevant metadata per broad sample
- Experimental Metadata - TSV file that contains additional information about the experiment
The platemap and metadata files are broken down by treatment (e.g., compound, crispr, or orf).
We downloaded metadata files excluding the Experimental Metadata from the metadata folder in AWS. We downloaded the barcode platemap and platemap files from the platemaps folder in AWS. We downloaded the experimental metadata file from the jump-cellpainting github repo subfolder.
Visualization of the platemaps are as follows:
Platemap for compound treatments
Platemap for crispr treatments
Platemap for orf treatments