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@WGS-TB

WGS-TB

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  1. MentaLiST MentaLiST Public

    The MLST pipeline developed by the PathOGiST research group

    Julia 36 11

  2. SplitStrains SplitStrains Public

    Jupyter Notebook 4 3

  3. FK FK Public

    This is Nafiseh's implementation of the Fredman-Khachiyan algorithm with multiple clauses per iteration

    MATLAB 2

  4. BenchmarkDR BenchmarkDR Public

    This is a repository for the code related to benchmarking the drug resistance prediction approaches

    Python 2

  5. TreeShapeStats TreeShapeStats Public

    R 1 1

  6. PythonPRINCE PythonPRINCE Public

    This repository contains the code for the paper "PRINCE: A Machiavellian Approach for Tandem Repeat Copy Number Approximation"

    Jupyter Notebook 1 2

Repositories

Showing 10 of 15 repositories
  • MentaLiST Public

    The MLST pipeline developed by the PathOGiST research group

    WGS-TB/MentaLiST’s past year of commit activity
    Julia 36 MIT 11 39 2 Updated Nov 29, 2023
  • BenchmarkDR Public

    This is a repository for the code related to benchmarking the drug resistance prediction approaches

    WGS-TB/BenchmarkDR’s past year of commit activity
    Python 2 0 0 1 Updated Aug 4, 2022
  • FK Public

    This is Nafiseh's implementation of the Fredman-Khachiyan algorithm with multiple clauses per iteration

    WGS-TB/FK’s past year of commit activity
    MATLAB 2 0 0 0 Updated Jun 28, 2022
  • SplitStrains Public
    WGS-TB/SplitStrains’s past year of commit activity
    Jupyter Notebook 4 3 5 8 Updated Oct 11, 2021
  • MongooseGUI3 Public
    WGS-TB/MongooseGUI3’s past year of commit activity
    Python 0 2 0 0 Updated Sep 21, 2021
  • GroupTesting Public

    This is a repository where we keep the code and the results of our experiments on group testing via CS

    WGS-TB/GroupTesting’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 27, 2021
  • PathOGiST Public

    This repository contains the pipeline for the multi-criterion genomic analysis of bacterial pathogens

    WGS-TB/PathOGiST’s past year of commit activity
    Python 0 GPL-3.0 1 8 0 Updated May 15, 2020
  • PythonPRINCE Public

    This repository contains the code for the paper "PRINCE: A Machiavellian Approach for Tandem Repeat Copy Number Approximation"

    WGS-TB/PythonPRINCE’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Jan 15, 2020
  • RFDistributionR Public

    The R code for computing the distribution of RF distances from a given input tree

    WGS-TB/RFDistributionR’s past year of commit activity
    R 0 2 0 0 Updated Nov 9, 2019
  • MLST Public
    WGS-TB/MLST’s past year of commit activity
    Python 0 0 0 0 Updated Oct 19, 2019
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