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main.tex
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\documentclass[12pt]{book}
\usepackage[utf8]{inputenc}
\usepackage{amsmath, amssymb, amsfonts, amsthm}
\usepackage{bbm}
\usepackage{url}
\usepackage{geometry}
\geometry{
a4paper,
left=20mm,
right=20mm
}
\linespread{1.1}
\usepackage{soul} % For strikethrough
\usepackage{bm} % For bold in mathmode (greek characters}
\usepackage{gensymb} % for degree symbol
\usepackage{framed} % for text frames
\usepackage{pgfplots}
\pgfplotsset{compat=newest}
\usepackage{subfigure}
\usepackage{tikz}
\usetikzlibrary{cd} % for function diagrams
\usepackage{mathtools}
%\mathtoolsset{showonlyrefs}
\usepackage{cmap} %for copyable indexable pdf output
\usepackage{xcolor}
\definecolor{linkcolour}{rgb}{0,0.2,0.6}
\usepackage{hyperref}
\hypersetup{colorlinks,breaklinks,urlcolor=linkcolour, linkcolor=linkcolour, citecolor=linkcolour}
\renewcommand{\iff}{\Longleftrightarrow}
\newtheorem{theorem}{Theorem}[chapter]
\newtheorem{proposition}[theorem]{Proposition}
\newtheorem{corollary}[theorem]{Corollary}
\newtheorem{lemma}[theorem]{Lemma}
\newtheorem{exercise}{Exercise}[chapter]
\theoremstyle{definition}
\newtheorem{definition}{Definition}[chapter]
\theoremstyle{remark}
\newtheorem{ex}{Example}[chapter]
\newtheorem{remark}[theorem]{Remark}
\newcommand\numberthis{\addtocounter{equation}{1}\tag{\theequation}} % to number specific equations
\usepackage{enumitem}
\setenumerate[1]{label=(\roman*)}
\usepackage[affil-it]{authblk}
\renewcommand{\thefootnote}{\fnsymbol{footnote}}
\addtocounter{footnote}{-1}
\title{Nonlinear Dynamics and Chaos%
\thanks{\texttt{\href{http://vvz.ethz.ch/Vorlesungsverzeichnis/lerneinheit.view?lerneinheitId=139546&semkez=2020W&ansicht=KATALOGDATEN&lang=de}{151-0532-00L},
\href{http://vvz.ethz.ch/Vorlesungsverzeichnis/lerneinheit.view?lerneinheitId=139546&semkez=2020W&ansicht=KATALOGDATEN&lang=de}{151-0530-00L},
\href{https://github.com/TrevorWinstral/NLD_script}{Github Repository}
}}}
\author[1]{Prof. George Haller%
\thanks{ \texttt{\href{https://georgehaller.com/}{Website}, \href{mailto:[email protected]}{Email}}}}
\author[2]{Trevor Winstral}
\author[1]{Bálint Kaszás}
\affil[1]{Chair in Nonlinear Dynamics, Institute for Mechanical Systems, ETH Zürich}
\affil[2]{Department of Mathematics, ETH Zürich}
\date{2022}
\setcounter{chapter}{0}
\begin{document}
\maketitle
\tableofcontents
\newpage
\part{Nonlinear Dynamics and Chaos 1}
\include{intro.tex}
\newpage
\include{chap1.tex}
\newpage
\include{chap2.tex}
\newpage
\include{chap3.tex}
\newpage
\include{chap4.tex}
\newpage
\include{chap5.tex}
\newpage
\part{Nonlinear Dynamics and Chaos 2}
\include{chap6.tex}
\include{chap7.tex} % This was mistakenly made into a chapter, it should just be a section as it is now
\newpage
\include{chap8.tex}
\newpage
\include{chap9.tex}
\newpage
\include{chap10.tex}
\newpage
\bibliographystyle{apalike}
\bibliography{refs}
\end{document}