Running setup.py install for scikit-bio ... error

[jesika0123]

Hello Till,

I have reached out to my IT department; however, they are not able to resolve the below issue. Do you have any suggestions on how to resolve this issue?

Running pythonv 3.9.5, PIPv21.1.1., Visual Studio 2017 Build Tools, and C++ Redistributable 2015-2022 x64

Running setup.py install for scikit-bio ... error
ERROR: Command errored out with exit status 1:
command: 'C:\Program Files\Python39\python.exe' -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Data\Temp\1\pip-install-lh82tpet\scikit-bio_a25f201b3cf941238c17716b646e77c8\setup.py'"'"'; file='"'"'C:\Data\Temp\1\pip-install-lh82tpet\scikit-bio_a25f201b3cf941238c17716b646e77c8\setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Data\Temp\1\pip-record-7tv85b_0\install-record.txt' --single-version-externally-managed --user --prefix= --compile --install-headers 'C:\Users\jrieder\AppData\Roaming\Python\Python39\Include\scikit-bio'
cwd: C:\Data\Temp\1\pip-install-lh82tpet\scikit-bio_a25f201b3cf941238c17716b646e77c8
Complete output (710 lines):

... ...

Studio\2022\BuildTools\VC\Tools\MSVC\14.39.33519\bin\HostX86\x64\cl.exe' failed with exit code 2
----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\Program Files\Python39\python.exe' -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Data\Temp\1\pip-install-lh82tpet\scikit-bio_a25f201b3cf941238c17716b646e77c8\setup.py'"'"'; file='"'"'C:\Data\Temp\1\pip-install-lh82tpet\scikit-bio_a25f201b3cf941238c17716b646e77c8\setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(file) if os.path.exists(file) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record 'C:\Data\Temp\1\pip-record-7tv85b_0\install-record.txt' --single-version-externally-managed --user --prefix= --compile --install-headers 'C:\Users\jrieder\AppData\Roaming\Python\Python39\Include\scikit-bio' Check the logs for full command output.

[TillMacher]

Hello,

I am aware of the various issues that have arisen over the past year regarding TTT, particularly with the installation process. Unfortunately, due to limited time for programming over the past 1.5 years, I haven’t been able to address these issues sooner.
However, I am currently working on TTT v2.0, which will bring improvements in performance, layout, and ease of installation. I think that TTT v2.0 will be ready for launch by November.
I apologize for not being able to assist with this specific issue at the moment...

Cheers,
Till

[OndroV]

Hello,
Seems to be related to an older issue of installing TTT on Windows. Maybe the installation in my reply there could solve this? But be sure to hit the Watch button at Till's TTT github page, because my TTT_scikitversion might not notify you when Till launches TTT 2.0 ;)

Best,
Ondrej