diff --git a/DESCRIPTION b/DESCRIPTION index 6bec6c89..71b40947 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -5,7 +5,7 @@ Description: Store and retrieve single cell data using TileDB and the on-disk format proposed in the Unified Single Cell Data Model and API. Users can import from and export to in-memory formats used by popular toolchains like Seurat and Bioconductor SingleCellExperiment. -Version: 0.1.0.9010 +Version: 0.1.1 Authors@R: c( person(given = "Aaron", family = "Wolen", @@ -34,7 +34,7 @@ Imports: R6, methods, Matrix, - tiledb (>= 0.12.0.2), + tiledb (>= 0.13.0), SeuratObject, jsonlite, glue, @@ -50,7 +50,5 @@ Suggests: testthat (>= 3.0.0), SummarizedExperiment, SingleCellExperiment -Remotes: - tiledb-inc/tiledb-r VignetteBuilder: knitr Config/testthat/edition: 2 diff --git a/NEWS.md b/NEWS.md index 4d444295..fea14238 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,7 +1,9 @@ -# tiledbsc (development version) +# tiledbsc 0.1.1 tiledbsc now uses the enhanced Group API's introduced in TileDB v2.8 and TileDB-R 0.12.0. +*Note: The next version of tiledbsc will migrate to the new SOMA-based naming scheme described [here](https://github.com/single-cell-data/matrix-api/issues/27).* + ## On-disk changes Group-level metadata is now natively supported by TileDB so `TileDBGroup`-based classes no longer create nested `__tiledb_group_metadata` arrays for the purpose of storing group-level metadata. @@ -35,3 +37,4 @@ See [TileDB 2.8 release notes](https://github.com/TileDB-Inc/TileDB/releases/tag * The `uri` field for all TileDB(Array|Group)-based classes is now an active binding that retrieves the URI from the private `tiledb_uri` field * Several default parameters have been changed to store the the `X`, `obs`, and `var` arrays more efficiently on disk (#50) * Seurat cell identities are now stored in the `active_ident` attribute of the `obs` array (#56) +* Require at least version 0.13.0 of tiledb-r to support retrieval of group names