07_nf-core_and_ampliseq.md

SEMINAR 7: Introduction to the nf-core/ampliseq pipeline

Video link: https://vimeo.com/862294800

Presenter: Abhinav, Patricia

Links/Resources used:

1. nf-core/ampliseq pipeline
   1. Main page: https://nf-co.re/ampliseq
   2. Usage: https://nf-co.re/ampliseq/2.5.0/usage
      • Running the pipeline: https://nf-co.re/ampliseq/2.5.0/usage#running-the-pipeline
      • Input options: https://nf-co.re/ampliseq/2.5.0/usage#input-specifications
   3. Parameters: https://nf-co.re/ampliseq/2.5.0/parameters
      • Main arguments: https://nf-co.re/ampliseq/2.5.0/parameters#main-arguments
   4. Output docs: https://nf-co.re/ampliseq/2.5.0/output

2. nf-core/ampliseq Github: https://github.com/nf-core/ampliseq

   • Test config: https://github.com/nf-core/ampliseq/blob/master/conf/test.config

3. rclone: https://rclone.org/