SIRF SuperBuild on Docker

Docker

Docker is a low-overhead, container-based replacement for virtual machines (VMs).

This works best on a linux system due to:

1. Possibility to get CUDA support within the container
2. X11 windows displayed natively without needing e.g. a vnc server or desktop in the container
3. Really short installation instructions (see below)

Prerequisites

• Docker
  • The free Community Edition (CE) is sufficient
  • docker-compose
• The SIRF-SuperBuild repository

SIRF Installation

SIRF-SuperBuild$ docker-compose create

Well, that was easy. This will have pulled ubuntu:16.04, and fetched and built SIRF and all its dependencies into an image tagged in docker as ccppetmr/sirf.

Usage

SIRF-SuperBuild$ docker-compose start -ai sirf
(py2) sirfuser@hash:~$ gadgetron &
(py2) sirfuser@hash:~$ python SIRF-SuperBuild/INSTALL/SIRF/examples/Python/MR/fully_sampled_recon.py

The first line starts the sirf docker container. The second line starts gadgetron within the container as a background process. Finally, we can then run an example.

Notes

• You may have to run xhost + on to allow X11 forwarding on your host linux system
• Non-linux users (e.g. Windows) will need to set up a desktop and vnc server in order to have a GUI (docker files coming soon)