Examples

The SIRF root folder ($SIRF_PATH) has subfolders with examples that contain Matlab and Python scripts demonstrating how to use SIRF for PET and MR reconstruction.

The structure of the examples subfolder is as follows:

examples
    Matlab
        MR
            Gadgetron
        PET
        PETMR
    Python
        MR
            Gadgetron
        PET
        PETMR

The contents of subfolders named MR are described here and the contents of PET folders here.

Synergistic PET-MR reconstruction has not yet been implemented in SIRF, for now we just provide simplistic scripts in PETMR subfolders showing how we envisage the syntax of the simultaneous use of PET an MR functionality of SIRF.