From 14e29bacc2ea1821fd5eef74d7ed492bcb11a31c Mon Sep 17 00:00:00 2001
From: cl117 <cl117@rice.edu>
Date: Wed, 11 Sep 2024 11:12:29 -0600
Subject: [PATCH] update DockerFile to make sure container working

---
 flask/docker/Dockerfile           | 5 ++---
 flask/docker/Dockerfile-synbiohub | 3 +--
 flask/start.sh                    | 2 +-
 3 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/flask/docker/Dockerfile b/flask/docker/Dockerfile
index ba89039..f071d46 100644
--- a/flask/docker/Dockerfile
+++ b/flask/docker/Dockerfile
@@ -12,7 +12,7 @@ RUN ln -fs /usr/share/zoneinfo/America/New_York /etc/localtime && \
     dpkg-reconfigure -f noninteractive tzdata
 
 RUN apt-get update && \
-    apt-get install -y software-properties-common && \
+    apt-get install -y software-properties-common coreutils && \
     add-apt-repository ppa:deadsnakes/ppa && \
     apt-get update && \
     apt-get install -y git cron python3.11 python3-pip python3.11-venv && \
@@ -38,5 +38,4 @@ RUN mkdir /mnt/config && \
     rm -rf dumps && \
     ln -s /mnt/data dumps
 
-CMD "./start.sh"
-
+CMD sh -c ". ../../jammy/bin/activate && ./start.sh"
diff --git a/flask/docker/Dockerfile-synbiohub b/flask/docker/Dockerfile-synbiohub
index ecdec92..16e271d 100644
--- a/flask/docker/Dockerfile-synbiohub
+++ b/flask/docker/Dockerfile-synbiohub
@@ -40,5 +40,4 @@ RUN mkdir /mnt/config && \
 
 ADD config-synbiohub.json /mnt/config/config.json
 
-CMD "./start.sh"
-
+CMD sh -c ". ../../jammy/bin/activate && ./start.sh"
diff --git a/flask/start.sh b/flask/start.sh
index 66c1465..2b9765f 100755
--- a/flask/start.sh
+++ b/flask/start.sh
@@ -1,7 +1,7 @@
 #!/bin/bash
 
 echo "Starting SBOLExplorer"
-
+source ../../jammy/bin/activate
 export FLASK_APP=explorer.py
 export FLASK_ENV=development
 flask run --host=0.0.0.0 --port=13162