diff --git a/excel2sbol/excel2sbol/temp.py b/excel2sbol/excel2sbol/temp.py index e26aa2e..fc8d568 100644 --- a/excel2sbol/excel2sbol/temp.py +++ b/excel2sbol/excel2sbol/temp.py @@ -5,9 +5,9 @@ print(cwd) file_path_in = os.path.join(cwd, "excel2sbol", 'tests', 'test_files', - 'SBOL3_simple_library4.xlsx') + 'SBOL2_parts_project.xlsx') file_path_out = os.path.join(cwd, "excel2sbol", 'tests', 'test_files', - 'SBOL3_simple_library4.nt') + 'SBOL2_parts_project.xml') conv.converter(file_path_in, file_path_out) # conv.converter(file_path_in, file_path_out, sbol_version=2, diff --git a/excel2sbol/tests/test_files/SBOL2_parts_project.xlsx b/excel2sbol/tests/test_files/SBOL2_parts_project.xlsx new file mode 100644 index 0000000..4842472 Binary files /dev/null and b/excel2sbol/tests/test_files/SBOL2_parts_project.xlsx differ diff --git a/excel2sbol/tests/test_files/SBOL2_parts_project.xml b/excel2sbol/tests/test_files/SBOL2_parts_project.xml new file mode 100644 index 0000000..d9b03cc --- /dev/null +++ b/excel2sbol/tests/test_files/SBOL2_parts_project.xml @@ -0,0 +1,70 @@ + + + + + + coding sequence for module 1 + mKate2__u38__BS_u40_Pe_u41_ + + 1 + + + + + + also known as P1 promoter + + SSX1 + 1 + + + + + 1 + ECFP__u38__BS_u40_B_u41_ + + + + coding sequence for module 2 + + + + + MAFK + + + + also known as P2 promoter + + + 1 + + + + mKate2__u38__BS_u40_Pe_u41__sequence + + atggtgtctaagggcgaagagctgattaaggagaacatgcacatgaagctgtacatggagggcaccgtgaacaaccaccacttcaagtgcacatccgagggcgaaggcaagccctacgagggcacccagaccatgagaatcaaggtggtcgagggcggccctctccccttcgccttcgacatcctggctaccagcttcatgtacggcagcaaaaccttcatcaaccacacccagggcatccccgacttctttaagcagtccttccctgaggtaagtgtgctcgcttcggcagcacatatactatgttgaatgaggcttcagtactttacagaatcgttgcctgcacatcttggaaacacttgctgggattacttcttcagggacttcttaacccaacagaaggctcgagaaggtatattgctgttgacagtgagcgccgcttgaagtctttaattaaatagtgaagccacagatgtatttaattaaagacttcaagcggtgcctactgcctcggacttcaaggggctagaattcaaggggctactttaggagcaattatcttgtttactaaaactgaataccttgctatctctttgatacatttttacaaagctgaattaaaatggtataaattaaatcacttttttcaattgtactaacttcgagtcttctttttttttttcacagggcttcacatgggagagagtcaccacatacgaagacgggggcgtgctgaccgctacccaggacaccagcctccaggacggctgcctcatctacaacgtcaagatcagaggggtgaacttcccatccaacggccctgtgatgcagaagaaaacactcggctgggaggcctccaccgagatgctgtaccccgctgacggcggcctggaaggcagaagcgacatggccctgaagctcgtgggcgggggccacctgatctgcaacttgaagaccacatacagatccaagaaacccgctaagaacctcaagatgcccggcgtctactatgtggacagaagactggaaagaatcaaggaggccgacaaagagacctacgtcgagcagcacgaggtggctgtggccagatactgcgacctccctagcaaactggggcacaaacttaattgataaacataggatggcaagatcctggtatcggtctgcgagcaccgcttgaagtctttaattaaatacgcaccgcttgaagtctttaattaaatacgcaccgcttgaagtctttaattaaatacctcgagcctctggccacatcggttcctgcggtaagcgggactctggggttcgaaatgaccgaccaagcgacgcccaacctgccatcacgagatttcgattccaccgccgccttctatgaaaggttgggcttcggaatcgttttccgggacgccggctggatgatcctccagcgcggggatctcatgctggagttcttcgcccaccctagggggaggctaactgaaacacggaaggagacaataccggaaggaacccgcgctatgacggcaataaaaagacagaataaaacgcacggtgttgggtcgtttgttcataaacgcggggttcggtcccagggctggcactctgtcgataccccaccgagacgccattggggccaatacgcccgcgtttcttccttttccccaccccaccccccaagttcgggtgaaggcccagggctcgcagccaacgtcggggcggcaggccctgccataggcaccgcttgaagtctttaattaaatacgcaccgcttgaagtctttaattaaatacgcaccgcttgaagtctttaattaaatac + 1 + + + SSX1_sequence + 1 + + + cggccgccctgcagggtagccagatcatggctcactgcaacctcgtactcctgggctcaagctatcctcctacctcagcctcctgagtaacggactacaggcacaccaccccacctcgctaattttatttattttttttgtagagaaaagagacagggtattgctctgttgcccagggtggggtgcagtggcatgatcatggctcactgcaacctctgcctcccaggttcaagtgatcctccagctgtggcctccctaagtgctgggattacaaccgtgagccgccgcaccggcccaaatttcttacgtcactacagagttcctaggaaaaaatcccatacctgaaaaagatagaaactgacaggaaggatttgagatgatgacctgcttcatatacactccttattaaaactggataacaatgcaccaccgaggaggtggggagggataggaaaaatgaaaagagaaaatcagcgcatgcgtactctgatttgggaagactccaaagagaaaatcagagcatgcgtactctgaacttggagtagccaatcccaggggatgctttaggcgggaaagtcagagtttctgcctccattttgagaaggttctgtccctagagcctagactgatagaccccacatcagcttggcttgtcccgcctactgttctgacttctgattggccagatggagttcactaactgccctgattggtccatcatcctggagcaatgacattgcagaatattttctcctcctccagccacactttgtcaccaactgctgccaactcgccaccactgctgccgacctcgcaaccactgctttgtctctggcgcgcc + + + + ECFP__u38__BS_u40_B_u41__sequence + 1 + ccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagatagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagcttgtaagcgggactctggggttgaattcggatccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagatagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagcttgtaagcgggactctggggttaaagcaaattaaaaacaggatgaaaaagactgattggctcttcctcaatgcttgtgtgggtgaagttcgagggcgacaccctggtgaaccgcatcgagctgaagggcatcgacttcaaggaggacggcaacatcctggggcacaagctggagtacaacgccatcagcgacaacgtctatatcaccgccgacaagcagaagaacggcatcaaggccaacttcaagatccgccacaacatcgaggacggcagcgtgcagctcgccgaccactaccagcagaacacccccatcggcgacggccccgtgctgctgcccgacaaccactacctgagcacccagtccaagctgagcaaagaccccaacgagaagcgcgatcacatggtcctgctggagttcgtgaccgccgccgggatcactctcggcatggacgagctgtacaagtaaggatccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagatagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaagctagccgcttgaaggaataattaaa + + + + MAFK_sequence + + tgctgagtcagcaagatgctgagtcagcatcgtgctgagtcagcagactgctgagtcagcactatgctgagtcagcaacttgctgagtcagcatgctgctgagtcagcagtatgctgagtcagca + + 1 + + diff --git a/requirements.txt b/requirements.txt index 7972aa6..f55fa62 100644 --- a/requirements.txt +++ b/requirements.txt @@ -7,4 +7,4 @@ sbol3==1.0.1 tyto==1.2 urllib3==1.26.5 validators==0.18.2 -excel_sbol_utils==1.0.42 +excel_sbol_utils==1.0.43