-
Notifications
You must be signed in to change notification settings - Fork 4
/
NEWS.txt
50 lines (28 loc) · 1.39 KB
/
NEWS.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
CHANGES IN VERSION 1.18.0
-------------------------
NEW FEATURES
o Added functionality for survival and mixed effect survival analysis.
o Added new plotting functions for survival analysis.
o Added support for using weights for alternative results.
BUG FIXES
o Fixed issue with bubble plot where unicode characters don't show up on
certain operating systems.
o Fixed issue with bubble plot where legend was not accurately showing
conditions or phenotypes on the plot.
SIGNIFICANT USER-VISIBLE CHANGES
o Vignette has been updated with new dataset showcasing more functionality
of spicyR.
DEPRECATED ARGUMENTS
o `nCores` argument deprecated for both getPairwise() and spicy(), replaced
with `cores`.
o `BPPARAM` argument deprecated for both getPairwise() and spicy(), replaced
with `cores`.
o `imageIDCol` argument deprecated for both getPairwise() and spicy(), replaced
with `imageID`.
o `cellTypeCol` argument deprecated for both getPairwise() and spicy(), replaced
with `cellType`.
o `spatialCoordCols` argument deprecated for both getPairwise() and spicy(), replaced
with `spatialCoords`.
o `Rs` argument deprecated for both getPairwise() and spicy(), replaced
with `r`.
* Deprecation warnings have been added to guide users to the new argument names.