diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 1c36a99..a7027d5 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -52,9 +52,9 @@ jobs: fail-fast: false matrix: config: - - { os: ubuntu-latest, r: '4.2', bioc: '3.15', cont: "bioconductor/bioconductor_docker:RELEASE_3_15", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - - { os: macOS-latest, r: '4.2', bioc: '3.15'} - - { os: windows-latest, r: '4.2', bioc: '3.15'} + - { os: ubuntu-latest, r: '4.2', bioc: '3.18', cont: "bioconductor/bioconductor_docker:RELEASE_3_18", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } + - { os: macOS-latest, r: '4.2', bioc: '3.18'} + - { os: windows-latest, r: '4.2', bioc: '3.18'} ## Check https://github.com/r-lib/actions/tree/master/examples ## for examples using the http-user-agent env: @@ -105,16 +105,16 @@ jobs: uses: actions/cache@v3 with: path: ${{ env.R_LIBS_USER }} - key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_15-r-4.2-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_15-r-4.2- + key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_18-r-4.2-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_18-r-4.2- - name: Cache R packages on Linux if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' " uses: actions/cache@v3 with: path: /home/runner/work/_temp/Library - key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_15-r-4.2-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_15-r-4.2- + key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_18-r-4.2-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_18-r-4.2- - name: Install Linux system dependencies if: runner.os == 'Linux' @@ -176,7 +176,7 @@ jobs: gha_repos <- if( .Platform$OS.type == "unix" && Sys.info()["sysname"] != "Darwin" ) c( - "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.15/bioc", + "AnVIL" = "https://bioconductordocker.blob.core.windows.net/packages/3.18/bioc", BiocManager::repositories() ) else BiocManager::repositories() @@ -291,7 +291,7 @@ jobs: if: failure() uses: actions/upload-artifact@v3 with: - name: ${{ runner.os }}-biocversion-RELEASE_3_15-r-4.2-results + name: ${{ runner.os }}-biocversion-RELEASE_3_18-r-4.2-results path: check ## Note that DOCKER_PASSWORD is really a token for your dockerhub