diff --git a/404.html b/404.html index dda9ae7..ca4da79 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/Breast_Data.html b/articles/case_study/Breast_Data.html index d3fea71..bf88ac2 100644 --- a/articles/case_study/Breast_Data.html +++ b/articles/case_study/Breast_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/CellBench_Data.html b/articles/case_study/CellBench_Data.html index 3828ec3..7886d01 100644 --- a/articles/case_study/CellBench_Data.html +++ b/articles/case_study/CellBench_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/ESC_Data.html b/articles/case_study/ESC_Data.html index a03f30a..d2f30cd 100644 --- a/articles/case_study/ESC_Data.html +++ b/articles/case_study/ESC_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/Mouse_Liver_Data.html b/articles/case_study/Mouse_Liver_Data.html index 676b05a..56c73ab 100644 --- a/articles/case_study/Mouse_Liver_Data.html +++ b/articles/case_study/Mouse_Liver_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/Neuronal_Data.html b/articles/case_study/Neuronal_Data.html index 608824c..8e3ad5e 100644 --- a/articles/case_study/Neuronal_Data.html +++ b/articles/case_study/Neuronal_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/Pancreas4_Data.html b/articles/case_study/Pancreas4_Data.html index bd9053b..20c5dac 100644 --- a/articles/case_study/Pancreas4_Data.html +++ b/articles/case_study/Pancreas4_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/case_study/mESC_Data.html b/articles/case_study/mESC_Data.html index 82edb38..d54fd23 100644 --- a/articles/case_study/mESC_Data.html +++ b/articles/case_study/mESC_Data.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/index.html b/articles/index.html index abdebd0..0a07750 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/articles/scMerge.html b/articles/scMerge.html index 6b7b512..d19d29a 100644 --- a/articles/scMerge.html +++ b/articles/scMerge.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 @@ -430,9 +430,9 @@

Using approximated SVD#> scMerge complete! 
 paste("Normally, scMerge takes ", round(t2 - t1, 2), " seconds")
-#> [1] "Normally, scMerge takes  1.37  seconds"
+#> [1] "Normally, scMerge takes  2.03  seconds"
 paste("Fast version of scMerge takes ", round(t4 - t3, 2), " seconds")
-#> [1] "Fast version of scMerge takes  17.7  seconds"
+#> [1] "Fast version of scMerge takes  25.75  seconds"
 
 scMerge_fast = runPCA(scMerge_fast, exprs_values = "scMerge_fast")
 
@@ -569,7 +569,7 @@ 
Session Info#> other attached packages:
 #>  [1] BiocSingular_1.16.0         scater_1.28.0              
 #>  [3] ggplot2_3.5.0               scuttle_1.10.3             
-#>  [5] scMerge_1.15.0              SingleCellExperiment_1.22.0
+#>  [5] scMerge_1.19.0              SingleCellExperiment_1.22.0
 #>  [7] SummarizedExperiment_1.30.2 Biobase_2.60.0             
 #>  [9] GenomicRanges_1.52.1        GenomeInfoDb_1.36.4        
 #> [11] IRanges_2.34.1              S4Vectors_0.38.2           
diff --git a/articles/scMerge2.html b/articles/scMerge2.html
index a660497..9105725 100644
--- a/articles/scMerge2.html
+++ b/articles/scMerge2.html
@@ -33,7 +33,7 @@
       
       
         scMerge
-        1.15.0
+        1.19.0
@@ -528,7 +528,7 @@

Session Info#> #> other attached packages: #> [1] scater_1.28.0 ggplot2_3.5.0 -#> [3] scuttle_1.10.3 scMerge_1.15.0 +#> [3] scuttle_1.10.3 scMerge_1.19.0 #> [5] SingleCellExperiment_1.22.0 SummarizedExperiment_1.30.2 #> [7] Biobase_2.60.0 GenomicRanges_1.52.1 #> [9] GenomeInfoDb_1.36.4 IRanges_2.34.1 diff --git a/authors.html b/authors.html index 3a906e0..0f3a268 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/index.html b/index.html index 89869e2..908b357 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/news/index.html b/news/index.html index 38b88d9..dbece1e 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/pkgdown.yml b/pkgdown.yml index ae3528e..b9243ad 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -11,5 +11,5 @@ articles: Pancreas4_Data: case_study/Pancreas4_Data.html scMerge: scMerge.html scMerge2: scMerge2.html -last_built: 2024-04-12T14:08Z +last_built: 2024-04-12T14:13Z diff --git a/reference/example_sce.html b/reference/example_sce.html index 6d74620..ff7223a 100644 --- a/reference/example_sce.html +++ b/reference/example_sce.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/fastRUVIII.html b/reference/fastRUVIII.html index 0fc0351..1d1f374 100644 --- a/reference/fastRUVIII.html +++ b/reference/fastRUVIII.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/getAdjustedMat.html b/reference/getAdjustedMat.html index 5fbabba..c06570f 100644 --- a/reference/getAdjustedMat.html +++ b/reference/getAdjustedMat.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/index.html b/reference/index.html index 8994d85..ce51ba4 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/ruvSimulate.html b/reference/ruvSimulate.html index 6c38eaa..d06c120 100644 --- a/reference/ruvSimulate.html +++ b/reference/ruvSimulate.html @@ -20,7 +20,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scMerge.html b/reference/scMerge.html index 73537c1..92ae5e3 100644 --- a/reference/scMerge.html +++ b/reference/scMerge.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scMerge2.html b/reference/scMerge2.html index 670e753..b328a3d 100644 --- a/reference/scMerge2.html +++ b/reference/scMerge2.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scMerge2h.html b/reference/scMerge2h.html index a5836ea..25813d5 100644 --- a/reference/scMerge2h.html +++ b/reference/scMerge2h.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scRUVIII.html b/reference/scRUVIII.html index bb598ad..f05d2d7 100644 --- a/reference/scRUVIII.html +++ b/reference/scRUVIII.html @@ -19,7 +19,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scRUVg.html b/reference/scRUVg.html index 4d4afc6..2e20bc5 100644 --- a/reference/scRUVg.html +++ b/reference/scRUVg.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scReplicate.html b/reference/scReplicate.html index d4ec0f9..039088d 100644 --- a/reference/scReplicate.html +++ b/reference/scReplicate.html @@ -17,7 +17,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/scSEGIndex.html b/reference/scSEGIndex.html index 1687ab6..03caaeb 100644 --- a/reference/scSEGIndex.html +++ b/reference/scSEGIndex.html @@ -23,7 +23,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/sce_cbind.html b/reference/sce_cbind.html index 7845bc1..d4b4ab6 100644 --- a/reference/sce_cbind.html +++ b/reference/sce_cbind.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/segList.html b/reference/segList.html index 947ecbb..0232141 100644 --- a/reference/segList.html +++ b/reference/segList.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0 diff --git a/reference/segList_ensemblGeneID.html b/reference/segList_ensemblGeneID.html index e2c98e4..b19f26e 100644 --- a/reference/segList_ensemblGeneID.html +++ b/reference/segList_ensemblGeneID.html @@ -18,7 +18,7 @@ scMerge - 1.15.0 + 1.19.0