scMerge 1.1.6

Accepts DelayedArray, HDF5Array and dgCMatrix inputs in the slots of input SCE objects.
Significant speed optimisation on scSEGIndex and add BiocParallel support.
Updated scSEGIndex references after publication.
scMerge now has the svd_k input that controls the number eigenvectors needed in the RUV step to allow fast approximation for large dataset.
Now using BiocSingular to manage all SVD components.
Now automatically remove zeroes in the rows and columns of the SCE.

scMerge 1.1.5

Adding version restrictions on S4Vectors and SingleCellExperiment dependent packages.

scMerge 1.1.4

plot_igraph would allow suppression of igraph output during unsupervised scMerge

scMerge 1.1.3

Column name must be non-NULL and without duplicates

scMerge 1.1.2

Resolved problems with only a single linking cell-type across multiple batches

scMerge 1.1.0

Accepted by Bioconductor

scMerge 0.99 (development version)

scMerge 0.99.24

Updated ciation information due to PNAS acceptance.

scMerge 0.99.23

Fixed assignment based on feedbacks

scMerge 0.99.21

Increase code coverage to 85%.

scMerge 0.99.20

Updated vignette on SEGs and manuals

scMerge 0.99.19

Fixed spelling
Added verbose option
Code coverage at 75 percent (more tests on error handling needed)

scMerge 0.99.17

Fixed README install_github vignette issue.
Fixed pkgdown organisation issue.
Major updates on the scReplicate function: more informative messages.
Using cross-product of matrix to perform SVD to speed up calculations.
Added testing scripts.
Fixed vignette text output issues.

scMerge 0.99.11

Reduced data size in scMerge to pass BioC checks