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Parallelize IES reporting in fuzzy mode #5

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kbseah opened this issue Oct 2, 2020 · 2 comments
Open

Parallelize IES reporting in fuzzy mode #5

kbseah opened this issue Oct 2, 2020 · 2 comments
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enhancement New feature or request wontfix This will not be worked on

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@kbseah
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kbseah commented Oct 2, 2020

Processing of IES candidates in fuzzy mode to get consensus sequence is slow. Speed up with parallelization?
@kbseah kbseah added the enhancement New feature or request label Oct 2, 2020
@kbseah
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kbseah commented Oct 13, 2020

A simple way to parallelize would be process each contig in a reference separately.

Before doing so need to check that temp files are appropriately handled and do not overwrite each other.

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kbseah commented Oct 15, 2020

Other places that could benefit from parallelization:

  • Telomere finding in MILTEL by NCRF
  • Read consensus in MILRAA for subreads with SPOA

@kbseah kbseah added the wontfix This will not be worked on label Oct 26, 2020
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