6_rstudio.Dockerfile

# Harden rstudio-server
RUN mkdir -p /etc/rstudio && \
    echo "www-frame-origin=none" >> /etc/rstudio/rserver.conf && \
    echo "www-enable-origin-check=1" >> /etc/rstudio/rserver.conf && \
    echo "www-same-site=lax" >> /etc/rstudio/rserver.conf && \
    echo "restrict-directory-view=1" >> /etc/rstudio/rsession.conf && \
    # https://github.com/rstudio/rstudio/issues/14060
    echo "rsession-ld-library-path=/opt/conda/lib" >> /etc/rstudio/rserver.conf 

ENV PATH=$PATH:/usr/lib/rstudio-server/bin

RUN mamba install --quiet --yes \
      'r-rodbc' \
      'r-tidyverse' \
      'r-arrow' \
      'r-aws.s3' \
      'r-catools' \
      && \
      clean-layer.sh && \
      fix-permissions $CONDA_DIR && \
      fix-permissions /home/$NB_USER
      
# Install some default R packages
RUN mamba install --quiet --yes \
      'r-hdf5r' \
      'r-odbc' \
      'r-sf' \
      'r-e1071' \
      'r-markdown' \
    && \
    clean-layer.sh && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

RUN python3 -m pip install \
      'jupyter-rsession-proxy==2.2.0' \
      'jupyter-server-proxy==4.2.0' \
      'jupyter-shiny-proxy==1.1' && \
      fix-permissions $CONDA_DIR && \
      fix-permissions /home/$NB_USER

# If using the docker bit in other Dockerfiles, this must get written over in a later layer
ENV DEFAULT_JUPYTER_URL="/rstudio"
ENV GIT_EXAMPLE_NOTEBOOKS=https://github.com/StatCan/aaw-contrib-r-notebooks.git