From 1593f0bfe087730464d00166d6089da5eb4caab4 Mon Sep 17 00:00:00 2001
From: Shixiang Wang <wangshx@shanghaitech.edu.cn>
Date: Tue, 5 Dec 2023 17:25:00 +0800
Subject: [PATCH] auto detect t2t as genome_build, however, all necessary
 annotation file does not exist

---
 R/sig_tally.R | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/R/sig_tally.R b/R/sig_tally.R
index facb93a6..23d4fe33 100644
--- a/R/sig_tally.R
+++ b/R/sig_tally.R
@@ -390,6 +390,8 @@ sig_tally.MAF <- function(object, mode = c("SBS", "DBS", "ID", "ALL"),
       genome_build <- "hg19"
     } else if (grepl("hg38", ref_genome)) {
       genome_build <- "hg38"
+    } else if (grepl("T2T", ref_genome)) {
+      genome_build <- "T2T"
     } else if (grepl("mm10$", ref_genome)) {
       genome_build <- "mm10"
     } else if (grepl("mm9$", ref_genome)) {