regex issues

[tgbugs]

Double prefix issues RRID:RRID: should be handled nicely...
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965781/

Alternating RRID detection:
https://www.ncbi.nlm.nih.gov/pubmed/?term=27448245

[tgbugs]

EM needs to skip if it is preceded by a letter. @bandrow

[bandrow]

Hey Here are some papers that came back from Buraks pipeline that are wrong: Here is one paper that shows the behavior (for HAR not EM, but the idea is the same): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3730234/#annotations:cxKb1LbrEei4bVOBLVEs6w Results AB: 8 AB: 8 12946710 Methods AB: 1 AB: 1 12944293 Methods AB: 3 AB: 3 12944293 Results EM: 11 EM: 11 12865065 Results EM: 66 EM: 66 12865065 Imaging data EM: 0 EM: 0 12814572 Results EM: 12 EM: 12 12814572 Results EM: 4 EM: 4 12814572 Results EM: 5 EM: 5 12814572 Results EM: 9 EM: 9 12814572 Methods EM: 17 EM: 17 12799170 Results EM: 11 EM: 11 12788297 Results EM: 3 EM: 3 12788297 Methods EM: 0 EM: 0 12781993 Protocols AB: 100 AB: 100 12734584 Protocols AB:3 AB:3 12734584 Results EM: 2 EM: 2 12732659 Methods AB: 10 AB: 10 12689598 Classification of the relationships between MGI genes and transcript assemblies MGI: 1354170 MGI: 1354170 12620126 Comparison of DoTS and TIGR Mouse Gene Index MGI: 1858275 MGI: 1858275 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI: 1891236 MGI: 1891236 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI: 96490 MGI: 96490 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI: 98347 MGI: 98347 12620126 Transitive associations between MGI genes and assembled transcripts MGI:101784 MGI:101784 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI:106039 MGI:106039 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI:1341870 MGI:1341870 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI:95901 MGI:95901 12620126 Classification of the relationships between MGI genes and transcript assemblies MGI:97281 MGI:97281 12620126 Results AB: 46 AB: 46 12600751 Results AB: 47 AB: 47 12600751 Results RGD: 1 RGD: 1 12600751 Results RGD: 10 RGD: 10 12600751 Results and discussion MGI:97255 MGI:97255 12540299 Experimental Procedures WB: 50 WB: 50 12479811 Discussion TAC: 1 TAC: 1 12197944 Materials and methods WB: 250 WB: 250 12163470 Results and discussion EM: 5 EM: 5 12147237 Results and discussion EM: 84 EM: 84 12147237 Results AB: 26 AB: 26 12086588 Results AB: 42 AB: 42 12086588 Results AB: 8 AB: 8 12086588 Materials and methods WB: 1 WB: 1 12056833 Results EM: 1039 EM: 1039 11958826 Results EM: 1594 EM: 1594 11958826 Results EM: 332 EM: 332 11958826 Results EM: 368 EM: 368 11958826 Results EM: 378 EM: 378 11958826 Results EM: 450 EM: 450 11958826 Results EM: 453 EM: 453 11958826 Results EM: 807 EM: 807 11958826 Materials and Methods WB: 50 WB: 50 11877479 Patients and methods EM: 15 EM: 15 11804709 Patients and methods EM: 19 EM: 19 11804709 Patients and methods EM: 3 EM: 3 11804709 Patients and methods EM: 63 EM: 63 11804709 Patients and methods EM: 71 EM: 71 11804709 Results EM: 23 EM: 23 11804576 Results EM: 5 EM: 5 11804576 Material and methods AB: 0 AB: 0 11549391 Results EM: 0 EM: 0 11527562 Results EM: 1 EM: 1 11527562 Discussion EM: 14 EM: 14 11498283 Results EM: 11 EM: 11 11473084 Materials and methods EM: 11 EM: 11 11455896 Measures EM: 2 EM: 2 11313161 Results EM: 2 EM: 2 11164522 Normal snakes EM: 348 EM: 348 11164522 Results EM: 0 EM: 0 11150553 Results EM: 265 EM: 265 11150553 Results EM: 3 EM: 3 11150553 Results EM: 9 EM: 9 11150553 Discussion AB: 380 AB: 380 11036214 Discussion AB: 416 AB: 416 11036214 Materials and Methods WB: 250 WB: 250 10995432 Materials and methods WB: 10 WB: 10 10959837 Materials and methods EM: 29 EM: 29 10837805 Experimental procedure EM: 27 EM: 27 10676857 Experimental procedure EM: 67 EM: 67 10676857 Results MGI:96636 MGI:96636 10670465 Results EM: 8 EM: 8 10593616 Results EM: 145 EM: 145 10463628 Experiment 1 EM: 53 EM: 53 10386908 Experiment 1. Effects of an i.c.v. 5,7-DHT-induced lesion on the acquisition and subsequent performance of a conditional visual discrimination. EM: 135 EM: 135 10212053 Experiment 1. Effects of an i.c.v. 5,7-DHT-induced lesion on the acquisition and subsequent performance of a conditional visual discrimination. EM: 149 EM: 149 10212053 Results EM: 15 EM: 15 10208294 Isoflurane effects on the expression of AB toxicity AB: 15 AB: 15 9893123 Results EM: 44 EM: 44 9670851 Results EM: 9 EM: 9 9670851 Results EM: 8 EM: 8 9607605 Experimental Procedures WB: 0 WB: 0 9604927 Results EM: 146 EM: 146 9526040 Materials and methods AB: 75 AB: 75 9507076 Results EM: 0 EM: 0 9469727 Experimental Procedures AB: 10 AB: 10 9346239 Experimental Procedures EM: 2 EM: 2 9324359 Swim Test EM: 225 EM: 225 9226364 Results and Discussion EM: 19 EM: 19 9182689 Experimental Procedures AB: 50 AB: 50 9075929 Materials and methods AB: 75 AB: 75 9017231 Results EM: 0 EM: 0 8960986 Results EM: 1 EM: 1 8960986 Results EM: 0 EM: 0 8755480 Results EM: 46 EM: 46 8755480 Results EM: 74 EM: 74 8755480

…

On Tue, Sep 18, 2018 at 11:26 AM Tom Gillespie ***@***.***> wrote: EM needs to skip if it is preceded by a letter. @bandrow <https://github.com/bandrow> — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#6 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AFsrNSvV4begkbO2RFLyLSorRIz-o-7Pks5ucTrDgaJpZM4Kbg2G> .

-- All key biological entities deserve an #RRID! orcid.org/0000-0002-5497-0243