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Merge pull request #21 from ScaDS/jan-dataviz-requirements
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Update readme.md for additional package installations
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haesleinhuepf authored May 8, 2024
2 parents 45f167c + 32c7547 commit 8cdec17
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18 changes: 15 additions & 3 deletions day0_preparation/readme.md
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Expand Up @@ -36,16 +36,21 @@ mamba create --name devbio-napari-env python=3.9 devbio-napari pyqt -c conda-for
**Tip**: It is recommended to create one environment for every project you are executing.
In that way installed software libraries and tools cannot harm each other.

## Step 3: Testing the installation
## Step 3: Testing the environment and install additional packages

Afterwards you can enter the environment to work with it.
Afterwards you can activate the environment to work with it.
Whenever you want to work on the same project again, you should start a command line and enter this:

```
mamba activate devbio-napari-env
```
When activated, use the following lines to install additional required packages for the training:
```
mamba install plotly seaborn
pip install meteostat
```

Start Napari from the terminal like this:
After package installation, try to start Napari from the terminal like this:

```
naparia
Expand Down Expand Up @@ -121,3 +126,10 @@ pip install --upgrade pywin32==228

[Source](https://github.com/conda/conda/issues/11503)

## Troubleshooting: Meteostat cannot be loaded
When the import of meteostat fails after installing it with pip, make sure that the pip version of mamba is used for installation by:
```
~/miniforge3/envs/devbio-napari-env/bin/pip3 install meteostat
```


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