Merge pull request #421 from SainsburyWellcomeCentre/gl-issue-418 #203
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| # Builds the aeon environment; lints formatting and smells via ruff; checks type annotations via pyright; | |
| # tests via pytest; reports test coverage via pytest-cov and codecov. | |
| name: build_env_run_tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| types: [opened, reopened, synchronize] | |
| workflow_dispatch: # allows running manually from Github's 'Actions' tab | |
| jobs: | |
| build_env_run_tests: # checks for building env using pyproject.toml and runs codebase checks and tests | |
| name: Build env using pip and pyproject.toml on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: [3.11] | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: ${{ matrix.os == 'windows-latest' && 'cmd' || 'bash' }} -l {0} # Adjust shell based on OS | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create venv and install dependencies | |
| run: | | |
| python -m venv .venv | |
| .venv/Scripts/activate || source .venv/bin/activate | |
| pip install -e .[dev] | |
| pip list | |
| python -c "import aeon" | |
| - name: Activate venv for later steps | |
| run: | | |
| echo "VIRTUAL_ENV=$(pwd)/.venv" >> $GITHUB_ENV | |
| echo "$(pwd)/.venv/bin" >> $GITHUB_PATH # For Unix-like systems | |
| echo "$(pwd)/.venv/Scripts" >> $GITHUB_PATH # For Windows | |
| # Only run codebase checks and tests for Linux (ubuntu). | |
| - name: ruff | |
| run: ruff check . | |
| - name: pyright | |
| run: pyright --level error --project ./pyproject.toml . | |
| - name: pytest | |
| run: pytest tests/ --ignore=tests/dj_pipeline | |
| - name: generate test coverage report | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| python -m pytest --cov=aeon tests/ --ignore=tests/dj_pipeline --cov-report=xml:tests/test_coverage/test_coverage_report.xml | |
| - name: upload test coverage report to codecov | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: tests/test_coverage/ | |
| files: test_coverage_report.xml | |
| fail_ci_if_error: true | |
| verbose: true |