From 0d212a82bbe4ef37f37cc3dbc82f33ec6c628e50 Mon Sep 17 00:00:00 2001 From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Date: Wed, 31 Jan 2024 10:34:22 -0700 Subject: [PATCH 1/2] Point template menu to one maintained in DM repo Signed-off-by: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> --- NF-OSI/dca_config.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/NF-OSI/dca_config.json b/NF-OSI/dca_config.json index 0af010a..b8b09d1 100644 --- a/NF-OSI/dca_config.json +++ b/NF-OSI/dca_config.json @@ -4,7 +4,7 @@ "synapse_asset_view": "syn16858331", "data_model_url": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/main/NF.jsonld", "data_model_info": "", - "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/main/NF-OSI/dca-template-config.json", + "template_menu_config_file": "https://raw.githubusercontent.com/nf-osi/nf-metadata-dictionary/main/dca-template-config.json", "logo_location": "", "logo_link": "", "dcc_help_link": "", From 08247860b8f87073dd8af4d0d1a784fc4a34010f Mon Sep 17 00:00:00 2001 From: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> Date: Wed, 31 Jan 2024 10:36:30 -0700 Subject: [PATCH 2/2] Delete NF template menu config given updated location Signed-off-by: Anh Nguyet Vu <32753274+anngvu@users.noreply.github.com> --- NF-OSI/dca-template-config.json | 26 -------------------------- 1 file changed, 26 deletions(-) delete mode 100644 NF-OSI/dca-template-config.json diff --git a/NF-OSI/dca-template-config.json b/NF-OSI/dca-template-config.json deleted file mode 100644 index 6f5ada1..0000000 --- a/NF-OSI/dca-template-config.json +++ /dev/null @@ -1,26 +0,0 @@ -{ - "manifest_schemas": [ - {"display_name": "Whole Genome Sequencing Assay", "schema_name": "WGSTemplate", "type": "file"}, - {"display_name": "Whole Exome Sequencing Assay", "schema_name": "WESTemplate", "type": "file"}, - {"display_name": "RNA Sequencing Assay", "schema_name": "RNASeqTemplate", "type": "file"}, - {"display_name": "Single-cell RNA Sequencing Assay", "schema_name": "ScRNASeqTemplate", "type": "file"}, - {"display_name": "Epigenetics Assay", "schema_name": "EpigeneticsAssayTemplate", "type": "file"}, - {"display_name": "Other Genomics Assay", "schema_name": "GenomicsAssayTemplate", "type": "file"}, - {"display_name": "Extended Genomics Assay", "schema_name": "GenomicsAssayTemplateExtended", "type": "file"}, - {"display_name": "Imaging Assay", "schema_name": "ImagingAssayTemplate", "type": "file"}, - {"display_name": "MRI Assay", "schema_name": "MRIAssayTemplate", "type": "file"}, - {"display_name": "Pharmacokinetics Assay", "schema_name": "PharmacokineticsAssayTemplate", "type": "file"}, - {"display_name": "Proteomics Assay", "schema_name": "ProteomicsAssayTemplate", "type": "file"}, - {"display_name": "Plate-Based Reporter Assay", "schema_name": "PlateBasedReporterAssayTemplate", "type": "file"}, - {"display_name": "Update Milestone Report", "schema_name": "UpdateMilestoneReport", "type": "file"}, - {"display_name": "Clinical Assay Template", "schema_name": "ClinicalAssayTemplate", "type": "file"}, - {"display_name": "Processed/Aligned Sequencing Reads", "schema_name": "ProcessedAlignedReadsTemplate", "type": "file"}, - {"display_name": "Processed Variant Calls", "schema_name": "ProcessedVariantCallsTemplate", "type": "file"}, - {"display_name": "Processed Expression Data", "schema_name": "ProcessedExpressionTemplate", "type": "file"}, - {"display_name": "FACS Template", "schema_name": "FlowCytometryTemplate", "type": "file"}, - {"display_name": "Light Scattering Assay", "schema_name": "LightScatteringAssayTemplate", "type": "file"}, - {"display_name": "Protocol Resource", "schema_name": "ProtocolTemplate", "type": "file"} - ], - "service_version": "23.9.3", - "schema_version": "" -}