From d977158dbef49d2f4b7d905b0b930c730c638852 Mon Sep 17 00:00:00 2001 From: Nicholas Lee Date: Thu, 7 Dec 2023 13:58:37 -0800 Subject: [PATCH 1/2] updated configuration for EL and CB --- CB/dca-template-config.json | 4 ++-- EL/dca-template-config.json | 47 ++++++++++++++++++++++++++++--------- EL/dca_config.json | 8 +++---- 3 files changed, 42 insertions(+), 17 deletions(-) diff --git a/CB/dca-template-config.json b/CB/dca-template-config.json index 59bfaac..033b7ed 100644 --- a/CB/dca-template-config.json +++ b/CB/dca-template-config.json @@ -3,12 +3,12 @@ { "display_name": "FileMapToIndividual", "schema_name": "FileMapToIndividual", - "type": "records" + "type": "record" }, { "display_name": "Individual Metadata", "schema_name": "IndividualMetadata", - "type": "records" + "type": "record" } ], "service_version": "v23.1.1", diff --git a/EL/dca-template-config.json b/EL/dca-template-config.json index 139f59c..7290cd0 100644 --- a/EL/dca-template-config.json +++ b/EL/dca-template-config.json @@ -1,27 +1,27 @@ { "manifest_schemas": [ { - "display_name": "Biospecimen human", - "schema_name": "Biospecimenhuman", + "display_name": "BiospecimenHuman", + "schema_name": "BiospecimenHuman", "type": "record" }, { - "display_name": "Biospecimen nonHuman", - "schema_name": "BiospecimennonHuman", + "display_name": "BiospecimenNonHuman", + "schema_name": "BiospecimenNonHuman", "type": "record" }, { - "display_name": "Individual Human", + "display_name": "IndividualHuman", "schema_name": "IndividualHuman", "type": "record" }, { - "display_name": "Individual nonHuman", + "display_name": "IndividualnonHuman", "schema_name": "IndividualnonHuman", "type": "record" }, { - "display_name": "Metabolomics Human", + "display_name": "MetabolomicsHuman", "schema_name": "MetabolomicsHuman", "type": "file" }, @@ -31,11 +31,36 @@ "type": "file" }, { - "display_name": "NAseq", - "schema_name": "NAseq", + "display_name": "RNAseq", + "schema_name": "RNAseq", + "type": "file" + }, + { + "display_name": "WholeGenomeSequencing", + "schema_name": "WholeGenomeSequencing", + "type": "file" + }, + { + "display_name": "bsSeq", + "schema_name": "bsSeq", + "type": "file" + }, + { + "display_name": "Genotyping", + "schema_name": "genotyping", + "type": "file" + }, + { + "display_name": "Proteomics", + "schema_name": "proteomics", + "type": "file" + }, + { + "display_name": "scRNAseq", + "schema_name": "ScRNAseq", "type": "file" } ], "service_version": "v23.1.1", - "schema_version": "" -} + "schema_version": "v1.3" +} \ No newline at end of file diff --git a/EL/dca_config.json b/EL/dca_config.json index f481b5b..02fd368 100644 --- a/EL/dca_config.json +++ b/EL/dca_config.json @@ -3,12 +3,12 @@ "name": "EL", "synapse_asset_view": "syn51753858", "data_model_url": "https://raw.githubusercontent.com/eliteportal/data-models/main/EL.data.model.jsonld", - "data_model_info": "", + "data_model_info": "https://eliteportal.github.io/data-dictionary/", "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/main/EL/dca-template-config.json", "logo_location": "", - "logo_link": "", + "logo_link": "https://eliteportal.synapse.org/", "dcc_help_link": "", - "portal_help_link": "" + "portal_help_link": "https://help.eliteportal.org/help/" }, "dca": { "use_compliance_dashboard": false, @@ -31,4 +31,4 @@ "hide_blanks": false } } -} +} \ No newline at end of file From aed7bd221797b8a08b6e6b02cb7ffe8673d66bab Mon Sep 17 00:00:00 2001 From: Nicholas Lee Date: Thu, 7 Dec 2023 14:16:29 -0800 Subject: [PATCH 2/2] updated config file --- EL/dca-template-config.json | 16 ++++++++-------- EL/dca_config.json | 2 +- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/EL/dca-template-config.json b/EL/dca-template-config.json index 7290cd0..cf6eb71 100644 --- a/EL/dca-template-config.json +++ b/EL/dca-template-config.json @@ -1,27 +1,27 @@ { "manifest_schemas": [ { - "display_name": "BiospecimenHuman", - "schema_name": "BiospecimenHuman", + "display_name": "Biospecimen Human", + "schema_name": "Biospecimenhuman", "type": "record" }, { - "display_name": "BiospecimenNonHuman", - "schema_name": "BiospecimenNonHuman", + "display_name": "Biospecimen Non-Human", + "schema_name": "BiospecimennonHuman", "type": "record" }, { - "display_name": "IndividualHuman", + "display_name": "Individual Human", "schema_name": "IndividualHuman", "type": "record" }, { - "display_name": "IndividualnonHuman", + "display_name": "Individual Non-Human", "schema_name": "IndividualnonHuman", "type": "record" }, { - "display_name": "MetabolomicsHuman", + "display_name": "Metabolomics Human", "schema_name": "MetabolomicsHuman", "type": "file" }, @@ -36,7 +36,7 @@ "type": "file" }, { - "display_name": "WholeGenomeSequencing", + "display_name": "Whole Genome Sequencing", "schema_name": "WholeGenomeSequencing", "type": "file" }, diff --git a/EL/dca_config.json b/EL/dca_config.json index 02fd368..0accd43 100644 --- a/EL/dca_config.json +++ b/EL/dca_config.json @@ -5,7 +5,7 @@ "data_model_url": "https://raw.githubusercontent.com/eliteportal/data-models/main/EL.data.model.jsonld", "data_model_info": "https://eliteportal.github.io/data-dictionary/", "template_menu_config_file": "https://raw.githubusercontent.com/Sage-Bionetworks/data_curator_config/main/EL/dca-template-config.json", - "logo_location": "", + "logo_location": "https://github.com/eliteportal/data-models/blob/main/assets/ELITE_logo.png", "logo_link": "https://eliteportal.synapse.org/", "dcc_help_link": "", "portal_help_link": "https://help.eliteportal.org/help/"