From c6b5667f94463f4fc9b95b685f6cd0e750236910 Mon Sep 17 00:00:00 2001 From: Jenny Medina Date: Fri, 12 Jan 2024 10:18:38 -0500 Subject: [PATCH] adding entry_name and workspace secrets --- demo.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/demo.py b/demo.py index 0d50711..45e377b 100644 --- a/demo.py +++ b/demo.py @@ -44,13 +44,14 @@ def synstage_info(self, samplesheet_uri: str) -> LaunchInfo: run_name = self.get_run_name("synstage") return LaunchInfo( run_name=run_name, - pipeline="Sage-Bionetworks-Workflows/nf-synstage", + pipeline="Sage-Bionetworks-Workflows/nf-synapse", revision="main", + entry_name="NF_SYNSTAGE", profiles=["sage"], params={ "input": samplesheet_uri, }, - workspace_secrets=["SYNAPSE_AUTH_TOKEN"], + workspace_secrets=["SYNAPSE_AUTH_TOKEN", "SB_AUTH_TOKEN", "SB_API_ENDPOINT"], ) def rnaseq_info(self, staged_samplesheet_uri: str, outdir_uri: str) -> LaunchInfo: