From ab40f501892f4170dac49b6aa6c7f402b592e474 Mon Sep 17 00:00:00 2001 From: Jenny Medina Date: Fri, 12 Jan 2024 11:26:32 -0500 Subject: [PATCH] Restructuring --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index da59f94..4a662d0 100644 --- a/README.md +++ b/README.md @@ -15,8 +15,8 @@ This Python package provides the components to connect various third-party servi This repository includes a demonstration script called [`demo.py`](demo.py), which showcases how you can use `py-orca` to launch and monitor your workflows on Nextflow Tower. Specifically, it illustrates how to process an RNA-seq dataset using a series of workflow runs, namely `nf-synstage`, `nf-core/rnaseq`, and `nf-synindex`. `py-orca` can be used with any Python-compatible workflow management system to orchestrate each step (_e.g._ Airflow, Prefect, Dagster). The demonstration script uses [Metaflow](https://metaflow.org/) because it's easy to run locally and has an intuitive syntax. -The script assumes that the following environment variables are set. Before setting up these environment variables, ensure that you have an AWS profile configured for a role that has access to the dev/ops tower workspace you plan to launch your workflows from. -Refer to [`.env.example`](.env.example) for the format of their values as well as examples. You can set these environment variables using whatever method you prefer (_e.g._ using an `.env` file, sourcing a shell script). +The script assumes that the following environment variables are set. Before setting them up, ensure that you have an AWS profile configured for a role that has access to the dev/ops tower workspace you plan to launch your workflows from. You can set these environment variables using whatever method you prefer (_e.g._ using an `.env` file, sourcing a shell script). +Refer to [`.env.example`](.env.example) for the format of their values as well as examples. - `NEXTFLOWTOWER_CONNECTION_URI` - `SYNAPSE_CONNECTION_URI`