From 355b498a84e2aef8a49a3256ff3ee2e392f7f3fc Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue, 27 Dec 2022 16:20:47 +0000
Subject: [PATCH] Bump setuptools from 59.6.0 to 65.5.1

Bumps [setuptools](https://github.com/pypa/setuptools) from 59.6.0 to 65.5.1.
- [Release notes](https://github.com/pypa/setuptools/releases)
- [Changelog](https://github.com/pypa/setuptools/blob/main/CHANGES.rst)
- [Commits](https://github.com/pypa/setuptools/compare/v59.6.0...v65.5.1)

---
updated-dependencies:
- dependency-name: setuptools
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 Pipfile.lock | 518 ++++++++++++++++++++++++++++-----------------------
 1 file changed, 281 insertions(+), 237 deletions(-)

diff --git a/Pipfile.lock b/Pipfile.lock
index 2736e28..696a373 100644
--- a/Pipfile.lock
+++ b/Pipfile.lock
@@ -18,10 +18,11 @@
     "default": {
         "argcomplete": {
             "hashes": [
-                "sha256:291f0beca7fd49ce285d2f10e4c1c77e9460cf823eef2de54df0c0fec88b0d81",
-                "sha256:2c7dbffd8c045ea534921e63b0be6fe65e88599990d8dc408ac8c542b72a5445"
+                "sha256:6372ad78c89d662035101418ae253668445b391755cfe94ea52f1b9d22425b20",
+                "sha256:cffa11ea77999bb0dd27bb25ff6dc142a6796142f68d45b1a26b11f58724561e"
             ],
-            "version": "==1.12.3"
+            "markers": "python_version >= '3.6'",
+            "version": "==2.0.0"
         },
         "bagit": {
             "hashes": [
@@ -31,27 +32,31 @@
             "version": "==1.8.1"
         },
         "cachecontrol": {
+            "extras": [
+                "filecache"
+            ],
             "hashes": [
-                "sha256:b0d43d8f71948ef5ebdee5fe236b86c6ffc7799370453dccb0e894c20dfa487c",
-                "sha256:d8aca75b82eec92d84b5d6eb8c8f66ea16f09d2adb09dbca27fe2d5fc8d3732d"
+                "sha256:2c75d6a8938cb1933c75c50184549ad42728a27e9f6b92fd677c3151aa72555b",
+                "sha256:a5b9fcc986b184db101aa280b42ecdcdfc524892596f606858e0b7a8b4d9e144"
             ],
             "markers": "python_version >= '3.6'",
-            "version": "==0.12.10"
+            "version": "==0.12.11"
         },
         "certifi": {
             "hashes": [
-                "sha256:78884e7c1d4b00ce3cea67b44566851c4343c120abd683433ce934a68ea58872",
-                "sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569"
+                "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3",
+                "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"
             ],
-            "version": "==2021.10.8"
+            "markers": "python_version >= '3.6'",
+            "version": "==2022.12.7"
         },
         "charset-normalizer": {
             "hashes": [
-                "sha256:1eecaa09422db5be9e29d7fc65664e6c33bd06f9ced7838578ba40d58bdf3721",
-                "sha256:b0b883e8e874edfdece9c28f314e3dd5badf067342e42fb162203335ae61aa2c"
+                "sha256:5a3d016c7c547f69d6f81fb0db9449ce888b418b5b9952cc5e6e66843e9dd845",
+                "sha256:83e9a75d1911279afd89352c68b45348559d1fc0506b054b346651b5e7fee29f"
             ],
-            "markers": "python_version >= '3'",
-            "version": "==2.0.9"
+            "markers": "python_version >= '3.6'",
+            "version": "==2.1.1"
         },
         "coloredlogs": {
             "hashes": [
@@ -61,6 +66,22 @@
             "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
             "version": "==15.0.1"
         },
+        "cwl-upgrader": {
+            "hashes": [
+                "sha256:7d2b8b835f9f4c1068dfead0b7d9f60a88f27e5368d54d0301f2135942b35619",
+                "sha256:b25fc236407343d44cc830ac3f63eed395b8d872fc7e17db92cde583d4a3b2ec"
+            ],
+            "markers": "python_version >= '3.6' and python_version < '4'",
+            "version": "==1.2.4"
+        },
+        "cwl-utils": {
+            "hashes": [
+                "sha256:583f05010f7572f3a69310325472ccb6efc2db7f43dc6428d03552e0ffcbaaf9",
+                "sha256:fba9348bfef42e7d359f1a93e1188f1da40cce714532a3e49901343bae6b01a0"
+            ],
+            "markers": "python_version >= '3.6'",
+            "version": "==0.21"
+        },
         "cwlref-runner": {
             "hashes": [
                 "sha256:78152148b9b262797d0861584cefe462451da3661b6a7f73ef9ea0038be0dd13",
@@ -79,19 +100,19 @@
         },
         "cwltool": {
             "hashes": [
-                "sha256:91521eee31a37831ac6228eb031eafcbbe9486b79b29eede01ad98ef20b69ab9",
-                "sha256:ae1cd4626b5330457b1a62bcb2580f36f530264a80222f2cc17cf65899ebf04e"
+                "sha256:0152d8cdf6acaf3620f557b442941f577bff2851d9e2e866e6051ea48a37bdbe",
+                "sha256:8a816169cc97c9b6afe1b33df597351a060ea6c788b40762ea8de6ea6470b8a4"
             ],
             "markers": "python_version >= '3.6' and python_version < '4'",
-            "version": "==3.1.20211107152837"
+            "version": "==3.1.20221201130942"
         },
         "gitdb": {
             "hashes": [
-                "sha256:8033ad4e853066ba6ca92050b9df2f89301b8fc8bf7e9324d412a63f8bf1a8fd",
-                "sha256:bac2fd45c0a1c9cf619e63a90d62bdc63892ef92387424b855792a6cabe789aa"
+                "sha256:6eb990b69df4e15bad899ea868dc46572c3f75339735663b81de79b06f17eb9a",
+                "sha256:c286cf298426064079ed96a9e4a9d39e7f3e9bf15ba60701e95f5492f28415c7"
             ],
-            "markers": "python_version >= '3.6'",
-            "version": "==4.0.9"
+            "markers": "python_version >= '3.7'",
+            "version": "==4.0.10"
         },
         "gitpython": {
             "hashes": [
@@ -111,19 +132,19 @@
         },
         "idna": {
             "hashes": [
-                "sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff",
-                "sha256:9d643ff0a55b762d5cdb124b8eaa99c66322e2157b69160bc32796e824360e6d"
+                "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4",
+                "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"
             ],
-            "markers": "python_version >= '3'",
-            "version": "==3.3"
+            "markers": "python_version >= '3.5'",
+            "version": "==3.4"
         },
         "importlib-metadata": {
             "hashes": [
-                "sha256:53ccfd5c134223e497627b9815d5030edf77d2ed573922f7a0b8f8bb81a1c100",
-                "sha256:75bdec14c397f528724c1bfd9709d660b33a4d2e77387a3358f20b848bb5e5fb"
+                "sha256:8a8a81bcf996e74fee46f0d16bd3eaa382a7eb20fd82445c3ad11f4090334116",
+                "sha256:dd0173e8f150d6815e098fd354f6414b0f079af4644ddfe90c71e2fc6174346d"
             ],
-            "markers": "python_version == '3.7'",
-            "version": "==4.8.2"
+            "markers": "python_full_version < '3.8.0'",
+            "version": "==4.13.0"
         },
         "isodate": {
             "hashes": [
@@ -147,115 +168,150 @@
         },
         "lxml": {
             "hashes": [
-                "sha256:11ae552a78612620afd15625be9f1b82e3cc2e634f90d6b11709b10a100cba59",
-                "sha256:121fc6f71c692b49af6c963b84ab7084402624ffbe605287da362f8af0668ea3",
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@@ -272,6 +328,14 @@
             "markers": "python_version >= '3.7'",
             "version": "==2.6.3"
         },
+        "packaging": {
+            "hashes": [
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@@ -281,37 +345,23 @@
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@@ -323,11 +373,11 @@
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@@ -339,81 +389,75 @@
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@@ -425,11 +469,11 @@
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@@ -456,27 +500,27 @@
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