wf_vc_joint_final_mc.json

{  "workflow_id": "genomicsworkflowwithtasksoptimzedjointfg_mc",
    "config" : {"max_task_concurrency" : 512, "max_task_runtime" : 90000},
  "providers": [],
  "tasks": [
      {"id" : 1, "function_name" : "define_individuals_v2", "successors": [2,3,4,5,6,7],
        "properties": {
          "position": "start"
          }
        },
      {"id" : 2, "container_def_id" : "task_1_fg_optimised", "successors": [7]},
      {"id" : 3, "container_def_id" : "task_2_fg_optimised", "successors": [7]},
      {"id" : 4, "container_def_id" : "task_3_fg_optimised", "successors": [7]},
      {"id" : 5, "container_def_id" : "task_4_optimised", "successors": [7]},
      {"id" : 6, "container_def_id" : "task_5_optimised", "successors": [7]},
      {"id" : 7, "container_def_id" : "task_6b_fg_optimised", "successors": [8],
        "properties": {
          "dynamic_multiplicity" : "predecessor_outputs['1']['num_inds']",
          "scatter" : "predecessor_outputs['1']['env_vars']",
          "environment": "predecessor_outputs['1']['env_vars']",
          "static_output" : "predecessor_outputs['1']['env_vars']"
          }
        },

      {"id" : 8, "container_def_id" : "task_7b_fg_optimised", "successors": [9],
      "properties" : {
        "ignore_error":true,
        "follow" : 7,
        "environment": "predecessor_outputs['7']['static_output']",
        "static_output" : "predecessor_outputs['7']['static_output']"}},

      {"id" : 9, "container_def_id" : "task_8b_fg_optimised", "successors": [10],
      "properties" : {
        "ignore_error":true,
        "follow" : 7,
        "environment": "predecessor_outputs['8']['static_output']",
        "static_output" : "predecessor_outputs['8']['static_output']"}},

      {"id" : 10, "container_def_id" : "task_9b_fg_optimised", "successors": [11],
      "properties" : {
        "ignore_error":true,
        "follow" : 7,
        "environment": "predecessor_outputs['9']['static_output']",
        "static_output" : "predecessor_outputs['9']['static_output']"}},

      {"id" : 11, "container_def_id" : "task_10b_fg_optimised", "successors": [12],
      "properties" : {
        "ignore_error":true,
        "follow" : 7,
        "environment": "predecessor_outputs['10']['static_output']",
        "static_output" : "predecessor_outputs['10']['static_output']"}},

      {"id" : 12, "container_def_id" : "task_11b_gvcf_fg_optimised", "successors": [13],
      "properties" : {
        "ignore_error":true,
        "follow" : 7,
        "environment": "predecessor_outputs['11']['static_output']",
        "static_output" : "predecessor_outputs['11']['static_output']"}},
    {"id" : 13, "function_name" : "PreGVCF",  "successors": [14],
      "properties" : {
        "follow" : 7,
        "environment": "predecessor_outputs['12']['static_output']",
        "static_output" : "predecessor_outputs['12']['static_output']"}},

      {"id" : 14, "function_name" : "collectGVCFs",  "successors": [15],
      "properties" : {}},


      {"id" : 15, "container_def_id" : "task_12b_gvcf_fg_optimised", "successors": [16],
        "properties": {
          "ignore_error":true,
          "dynamic_multiplicity" : "predecessor_outputs['14']['joint_vc_slices']",
          "scatter" : "predecessor_outputs['14']['joint_vc_slice_vars']",
          "environment" : "predecessor_outputs['14']['joint_vc_slice_vars']"
          }
        },


      {"id" : 16, "function_name" : "collectVCFs", "successors": [17],
        "properties" : {
          "environment" : "predecessor_outputs['14']['joint_vc_slice_vars'][0]"
          }
      },

      {"id" : 17, "container_def_id" : "task_13_gvcf_fg_optimised", "successors": [18],
        "properties" : {
          "environment" : "predecessor_outputs['14']['joint_vc_slice_vars'][0]"
          }
      },

      {"id" : 18, "function_name" : "collectJointVariantGenomicsWorkflow",  "successors": [],
      "properties" : {}}
    ]
}