From 3bad47f4ebe7f995fd8e8d00007dcbbec8a4de79 Mon Sep 17 00:00:00 2001 From: Mateusz Charytoniuk Date: Wed, 7 Feb 2024 23:29:42 +0100 Subject: [PATCH 1/4] chore: move tools to a separate directory to avoid dependency conflicts --- .gitignore | 1 - composer.json | 44 +- composer.lock | 3393 ++++++++++++++++++++++++++++++ tools/php-cs-fixer/.gitignore | 1 + tools/php-cs-fixer/composer.json | 5 + tools/php-cs-fixer/composer.lock | 1823 ++++++++++++++++ tools/phpbench/.gitignore | 1 + tools/phpbench/composer.json | 5 + tools/phpbench/composer.lock | 1538 ++++++++++++++ tools/phpstan/.gitignore | 1 + tools/phpstan/composer.json | 12 + tools/phpstan/composer.lock | 177 ++ 12 files changed, 6983 insertions(+), 18 deletions(-) create mode 100644 composer.lock create mode 100644 tools/php-cs-fixer/.gitignore create mode 100644 tools/php-cs-fixer/composer.json create mode 100644 tools/php-cs-fixer/composer.lock create mode 100644 tools/phpbench/.gitignore create mode 100644 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"https://github.com/phpstan/phpstan-phpunit/tree/1.3.15" + }, + "time": "2023-10-09T18:58:39+00:00" + } + ], + "packages-dev": [], + "aliases": [], + "minimum-stability": "stable", + "stability-flags": [], + "prefer-stable": false, + "prefer-lowest": false, + "platform": [], + "platform-dev": [], + "plugin-api-version": "2.3.0" +} From 9ca5fc4465a4c341eb18dfea747d794d644d3c63 Mon Sep 17 00:00:00 2001 From: Mateusz Charytoniuk Date: Wed, 7 Feb 2024 23:49:31 +0100 Subject: [PATCH 2/4] chore: probably switch to 8.1 in order to support the latest phpunit and other tools --- .github/workflows/ci.yml | 2 +- composer.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 887fe6b81..412e2340b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -9,7 +9,7 @@ jobs: strategy: matrix: operating-system: [windows-latest, ubuntu-latest, macos-latest] - php-versions: ['8.0', '8.1', '8.2'] + php-versions: ['8.1', '8.2'] steps: - name: Checkout diff --git a/composer.json b/composer.json index fc9c86177..d497d56fc 100644 --- a/composer.json +++ b/composer.json @@ -31,7 +31,7 @@ } ], "require": { - "php": ">=8.0", + "php": ">=8.1", "ext-json": "*", "amphp/parallel": "^1.3", "andrewdalpino/okbloomer": "^1.0", From 75ab245b9ccff8fd81e8e21030a9c644cbe2632e Mon Sep 17 00:00:00 2001 From: Mateusz Charytoniuk Date: Wed, 7 Feb 2024 23:51:36 +0100 Subject: [PATCH 3/4] chore: update composer.lock --- composer.lock | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/composer.lock b/composer.lock index 3f7149cee..320ed7bd3 100644 --- a/composer.lock +++ b/composer.lock @@ -4,7 +4,7 @@ "Read more about it at https://getcomposer.org/doc/01-basic-usage.md#installing-dependencies", "This file is @generated automatically" ], - "content-hash": "a13874fb6a9fac5be222f855d62ef5a3", + "content-hash": "faaed844af42a144c15123badb549d2b", "packages": [ { "name": "amphp/amp", @@ -3385,7 +3385,7 @@ "prefer-stable": true, "prefer-lowest": false, "platform": { - "php": ">=8.0", + "php": ">=8.1", "ext-json": "*" }, "platform-dev": [], From 88efba493d7cbe0ce1575bc442441cf8c6c0e6be Mon Sep 17 00:00:00 2001 From: Mateusz Charytoniuk Date: Thu, 8 Feb 2024 00:03:24 +0100 Subject: [PATCH 4/4] chore: delete FeedForwad class as its unused --- src/NeuralNet/FeedForward.php | 271 ---------------------------------- 1 file changed, 271 deletions(-) delete mode 100644 src/NeuralNet/FeedForward.php diff --git a/src/NeuralNet/FeedForward.php b/src/NeuralNet/FeedForward.php deleted file mode 100644 index 957824c8c..000000000 --- a/src/NeuralNet/FeedForward.php +++ /dev/null @@ -1,271 +0,0 @@ - - */ - protected array $hidden = [ - // - ]; - - /** - * The pathing of the backward pass through the hidden layers. - * - * @var list<\Rubix\ML\NeuralNet\Layers\Hidden> - */ - protected array $backPass = [ - // - ]; - - /** - * The output layer of the network. - * - * @var Output - */ - protected \Rubix\ML\NeuralNet\Layers\Output $output; - - /** - * The gradient descent optimizer used to train the network. - * - * @var Optimizer - */ - protected \Rubix\ML\NeuralNet\Optimizers\Optimizer $optimizer; - - /** - * @param Input $input - * @param \Rubix\ML\NeuralNet\Layers\Hidden[] $hidden - * @param Output $output - * @param Optimizer $optimizer - */ - public function __construct(Input $input, array $hidden, Output $output, Optimizer $optimizer) - { - $hidden = array_values($hidden); - - $backPass = array_reverse($hidden); - - $this->input = $input; - $this->hidden = $hidden; - $this->output = $output; - $this->optimizer = $optimizer; - $this->backPass = $backPass; - } - - /** - * Return the input layer. - * - * @return Input - */ - public function input() : Input - { - return $this->input; - } - - /** - * Return an array of hidden layers indexed left to right. - * - * @return list<\Rubix\ML\NeuralNet\Layers\Hidden> - */ - public function hidden() : array - { - return $this->hidden; - } - - /** - * Return the output layer. - * - * @return Output - */ - public function output() : Output - { - return $this->output; - } - - /** - * Return all the layers in the network. - * - * @return \Traversable<\Rubix\ML\NeuralNet\Layers\Layer> - */ - public function layers() : Traversable - { - yield $this->input; - - yield from $this->hidden; - - yield $this->output; - } - - /** - * Return the number of trainable parameters in the network. - * - * @return int - */ - public function numParams() : int - { - $numParams = 0; - - foreach ($this->layers() as $layer) { - if ($layer instanceof Parametric) { - foreach ($layer->parameters() as $parameter) { - $numParams += $parameter->param()->size(); - } - } - } - - return $numParams; - } - - /** - * Initialize the parameters of the layers and warm the optimizer cache. - */ - public function initialize() : void - { - $fanIn = 1; - - foreach ($this->layers() as $layer) { - $fanIn = $layer->initialize($fanIn); - } - - if ($this->optimizer instanceof Adaptive) { - foreach ($this->layers() as $layer) { - if ($layer instanceof Parametric) { - foreach ($layer->parameters() as $param) { - $this->optimizer->warm($param); - } - } - } - } - } - - /** - * Run an inference pass and return the activations at the output layer. - * - * @param Dataset $dataset - * @return Matrix - */ - public function infer(Dataset $dataset) : Matrix - { - $input = Matrix::quick($dataset->samples())->transpose(); - - foreach ($this->layers() as $layer) { - $input = $layer->infer($input); - } - - return $input->transpose(); - } - - /** - * Perform a forward and backward pass of the network in one call. Returns - * the loss from the backward pass. - * - * @param Labeled $dataset - * @return float - */ - public function roundtrip(Labeled $dataset) : float - { - $input = Matrix::quick($dataset->samples())->transpose(); - - $this->feed($input); - - $loss = $this->backpropagate($dataset->labels()); - - return $loss; - } - - /** - * Feed a batch through the network and return a matrix of activations at the output later. - * - * @param Matrix $input - * @return Matrix - */ - public function feed(Matrix $input) : Matrix - { - foreach ($this->layers() as $layer) { - $input = $layer->forward($input); - } - - return $input; - } - - /** - * Backpropagate the gradient of the cost function and return the loss. - * - * @param list $labels - * @return float - */ - public function backpropagate(array $labels) : float - { - [$gradient, $loss] = $this->output->back($labels, $this->optimizer); - - foreach ($this->backPass as $layer) { - $gradient = $layer->back($gradient, $this->optimizer); - } - - return $loss; - } - - /** - * Export the network architecture as a graph in dot format. - * - * @return Encoding - */ - public function exportGraphviz() : Encoding - { - $dot = 'digraph Tree {' . PHP_EOL; - $dot .= ' node [shape=box, fontname=helvetica];' . PHP_EOL; - - $layerNum = 0; - - foreach ($this->layers() as $layer) { - ++$layerNum; - - $dot .= " N$layerNum [label=\"$layer\",style=\"rounded\"]" . PHP_EOL; - - if ($layerNum > 1) { - $parentId = $layerNum - 1; - - $dot .= " N{$parentId} -> N{$layerNum};" . PHP_EOL; - } - } - - $dot .= '}'; - - return new Encoding($dot); - } -}