From ea68c50fe7c281d275b2a5273c7b2ca2d8c1983e Mon Sep 17 00:00:00 2001 From: Kevin Lane Date: Sun, 21 Apr 2024 15:47:04 -0700 Subject: [PATCH] Fix CI (#317) --- .github/actions/setup-torchts/action.yml | 8 +- .github/workflows/docs.yml | 10 +- .github/workflows/labeler.yml | 4 +- .github/workflows/release.yml | 30 +- .github/workflows/security.yml | 16 +- .github/workflows/test.yml | 6 +- .pre-commit-config.yaml | 12 +- README.md | 2 +- poetry.lock | 2156 +++++++++++----------- pyproject.toml | 6 +- torchts/nn/models/ode.py | 2 +- 11 files changed, 1086 insertions(+), 1166 deletions(-) diff --git a/.github/actions/setup-torchts/action.yml b/.github/actions/setup-torchts/action.yml index d4fbacf2..07a0b70f 100644 --- a/.github/actions/setup-torchts/action.yml +++ b/.github/actions/setup-torchts/action.yml @@ -15,23 +15,23 @@ runs: using: composite steps: - name: Set up Python ${{ inputs.python-version }} - uses: actions/setup-python@v2.2.2 + uses: actions/setup-python@v5 with: python-version: ${{ inputs.python-version }} - name: Get Python version id: python-version - run: echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") + run: echo version=$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") >> $GITHUB_OUTPUT shell: bash - name: Install Poetry - uses: snok/install-poetry@v1.1.8 + uses: snok/install-poetry@v1 with: virtualenvs-create: true virtualenvs-in-project: true - name: Restore Poetry cache - uses: actions/cache@v2.1.6 + uses: actions/cache@v4 with: path: .venv key: poetry-${{ runner.os }}-${{ steps.python-version.outputs.version }}-${{ hashFiles('poetry.lock') }} diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index 8f9f24bc..0b46d50a 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -27,13 +27,15 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Set up TorchTS uses: ./.github/actions/setup-torchts + with: + python-version: 3.9 - name: Set up Node - uses: actions/setup-node@v3 + uses: actions/setup-node@v4 with: node-version: 14 @@ -49,14 +51,14 @@ jobs: - name: Generate token if: success() && github.event_name == 'push' id: generate-token - uses: tibdex/github-app-token@v1.5 + uses: tibdex/github-app-token@v2 with: app_id: ${{ secrets.APP_ID }} private_key: ${{ secrets.APP_PRIVATE_KEY }} - name: Deploy documentation if: success() && github.event_name == 'push' - uses: JamesIves/github-pages-deploy-action@v4.2.5 + uses: JamesIves/github-pages-deploy-action@v4 with: token: ${{ steps.generate-token.outputs.token }} git-config-name: torchts-bot[bot] diff --git a/.github/workflows/labeler.yml b/.github/workflows/labeler.yml index d358c707..f53a463e 100644 --- a/.github/workflows/labeler.yml +++ b/.github/workflows/labeler.yml @@ -11,12 +11,12 @@ jobs: steps: - name: Generate token id: generate-token - uses: tibdex/github-app-token@v1.5 + uses: tibdex/github-app-token@v2 with: app_id: ${{ secrets.APP_ID }} private_key: ${{ secrets.APP_PRIVATE_KEY }} - name: Label pull request - uses: actions/labeler@v4 + uses: actions/labeler@v5 with: repo-token: ${{ steps.generate-token.outputs.token }} diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 3a385b47..b3fd8552 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -13,24 +13,26 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Set up Python - uses: actions/setup-python@v3 + uses: actions/setup-python@v5 + with: + python-version: 3.9 - name: Install Poetry - uses: snok/install-poetry@v1.3 + uses: snok/install-poetry@v1 with: virtualenvs-create: true virtualenvs-in-project: true - name: Install dependencies and build project run: | - poetry install --no-dev + poetry install --without test,docs poetry build - name: Upload build artifacts - uses: actions/upload-artifact@v2.3.1 + uses: actions/upload-artifact@v4 with: name: poetry-build path: dist/ @@ -42,10 +44,10 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Download build artifacts - uses: actions/download-artifact@v2.1.0 + uses: actions/download-artifact@v4 with: name: poetry-build path: dist @@ -68,14 +70,14 @@ jobs: - name: Generate token if: success() && github.event_name == 'push' id: generate-token - uses: tibdex/github-app-token@v1.5 + uses: tibdex/github-app-token@v2 with: app_id: ${{ secrets.APP_ID }} private_key: ${{ secrets.APP_PRIVATE_KEY }} - name: Create release if: success() && github.event_name == 'push' - uses: softprops/action-gh-release@v1 + uses: softprops/action-gh-release@v2 with: token: ${{ steps.generate-token.outputs.token }} body_path: RELEASE.md @@ -89,19 +91,21 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Download build artifacts - uses: actions/download-artifact@v2.1.0 + uses: actions/download-artifact@v4 with: name: poetry-build path: dist - name: Set up Python - uses: actions/setup-python@v3 + uses: actions/setup-python@v5 + with: + python-version: 3.9 - name: Install Poetry - uses: snok/install-poetry@v1.3 + uses: snok/install-poetry@v1 with: virtualenvs-create: true virtualenvs-in-project: true diff --git a/.github/workflows/security.yml b/.github/workflows/security.yml index 4bcbdc05..bdbf4a1c 100644 --- a/.github/workflows/security.yml +++ b/.github/workflows/security.yml @@ -22,15 +22,15 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Initialize CodeQL - uses: github/codeql-action/init@v1 + uses: github/codeql-action/init@v3 with: languages: python - name: Run CodeQL - uses: github/codeql-action/analyze@v1 + uses: github/codeql-action/analyze@v3 ossar: name: OSSAR @@ -38,15 +38,15 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Run OSSAR id: ossar - uses: github/ossar-action@v1 + uses: github/ossar-action@v2 - name: Upload OSSAR results if: always() - uses: github/codeql-action/upload-sarif@v1 + uses: github/codeql-action/upload-sarif@v3 with: sarif_file: ${{ steps.ossar.outputs.sarifFile }} @@ -56,7 +56,7 @@ jobs: steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Run Semgrep uses: returntocorp/semgrep-action@v1 @@ -71,6 +71,6 @@ jobs: - name: Upload Semgrep results if: always() - uses: github/codeql-action/upload-sarif@v1 + uses: github/codeql-action/upload-sarif@v3 with: sarif_file: semgrep.sarif diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index d2d86600..fafb1d1d 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -24,11 +24,11 @@ jobs: fail-fast: false matrix: os: [Ubuntu, macOS, Windows] - python-version: [3.7, 3.8, 3.9] + python-version: [3.8, 3.9] steps: - name: Checkout - uses: actions/checkout@v2.4.0 + uses: actions/checkout@v4 - name: Set up TorchTS uses: ./.github/actions/setup-torchts @@ -43,7 +43,7 @@ jobs: - name: Upload coverage report if: success() - uses: codecov/codecov-action@v2.1.0 + uses: codecov/codecov-action@v4 with: file: ./coverage.xml fail_ci_if_error: true diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d74f66c7..0b875acd 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -6,24 +6,24 @@ ci: repos: - repo: https://github.com/psf/black - rev: 22.1.0 + rev: 24.4.0 hooks: - id: black - repo: https://github.com/asottile/pyupgrade - rev: v2.31.0 + rev: v3.15.2 hooks: - id: pyupgrade args: [--py36-plus] - repo: https://github.com/PyCQA/isort - rev: 5.10.1 + rev: 5.13.2 hooks: - id: isort additional_dependencies: [toml] - repo: https://github.com/flakeheaven/flakeheaven - rev: 0.11.0 + rev: 3.3.0 hooks: - id: flakeheaven additional_dependencies: @@ -31,14 +31,14 @@ repos: - flake8-comprehensions - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.1.0 + rev: v4.6.0 hooks: - id: end-of-file-fixer - id: mixed-line-ending - id: trailing-whitespace - repo: https://github.com/Lucas-C/pre-commit-hooks - rev: v1.1.13 + rev: v1.5.5 hooks: - id: forbid-crlf exclude: docs/make.bat diff --git a/README.md b/README.md index 2ccb942c..00a0aa3e 100644 --- a/README.md +++ b/README.md @@ -29,7 +29,7 @@ Existing time series analysis libraries include [statsmodels](https://www.statsm ### Installation Requirements -TorchTS supports Python 3.7+ and has the following dependencies: +TorchTS supports Python 3.8+ and has the following dependencies: - [PyTorch](https://pytorch.org/) - [PyTorch Lightning](https://pytorchlightning.ai/) diff --git a/poetry.lock b/poetry.lock index 86db14c9..7ccfadd1 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,15 @@ +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. + [[package]] name = "absl-py" version = "1.0.0" 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"^7.0.1" pytest-cov = "^3.0.0" pytest-mock = "^3.7.0" pre-commit = "^2.17.0" + +[tool.poetry.group.docs.dependencies] sphinx = "^4.4.0" asteroid-sphinx-theme = "^0.0.3" diff --git a/torchts/nn/models/ode.py b/torchts/nn/models/ode.py index 973b3eea..8e10ece0 100644 --- a/torchts/nn/models/ode.py +++ b/torchts/nn/models/ode.py @@ -40,7 +40,7 @@ def __init__( name: torch.tensor(value, device=self.device) for name, value in init_vars.items() } - self.coeffs = {name: param for name, param in self.named_parameters()} + self.coeffs = dict(self.named_parameters()) self.outvar = self.var_names if outvar is None else outvar # determines method of training