From 1e9ac0922baa50aa389d4a394ee7ce1c07c8723e Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Thu, 14 Nov 2024 16:39:32 -0500 Subject: [PATCH] fix: remove ad-hoc option for mriqc absent in older versions (at least the script portion) --- README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/README.md b/README.md index a801e850..04d70ac7 100644 --- a/README.md +++ b/README.md @@ -168,6 +168,9 @@ datalad install -d . -s ///repronim/containers code/containers # would fail to run on CI. datalad run -m "Downgrade/Freeze mriqc container version" \ code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0 +# That version of mriqc does not have an option --no-datalad-get we had to +# hardcode for mriqc to workaround an issue. So let's remove it +datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config # Install input data: datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata # Setup git to ignore workdir to be used by pipelines @@ -244,6 +247,8 @@ datalad run -m "Downgrade/Freeze mriqc container version" \ code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0 ``` + + **Option 2: ///repronim/containers** ```bash