_pkgdown.yml

url: https://raphaelnussbaumer.com/GeoPressureR/
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development:
  mode: auto

home:
  sidebar:
    structure: [community, citation, authors]
navbar:
  left:
    - text: "Reference"
      href: reference/index.html
    - text: "News"
      href: news/index.html

reference:
- title: Tag
  desc: Core functions related to a `tag` object.
  contents:
  - tag_create
  - tag_set_map
  - tag_update
- subtitle: Visualize tag
  desc: Print and plot a `tag` object.
  contents:
  - print.tag
  - plot.tag
  - plot_tag_pressure
  - plot_tag_light
  - plot_tag_twilight
  - plot_tag_acceleration
  - plot_tag_temperature
- subtitle: Label tag
  desc: Core functions related to labelling a `tag` object.
  contents:
  - tag_label
  - tag_label_auto
  - tag_label_write
  - tag_label_read
  - tag_label_stap
- subtitle: Tag utilities
  desc: Various utility functions related to a `tag` object.
  contents:
  - tag_assert
  - tag2path
  - tag2map
- title: GeoPressure
  desc: Core functions of the [GeoPressureAPI](https://github.com/Rafnuss/GeoPressureAPI).
- subtitle: GeoPressure map
  desc: Geopositioning based on pressure data.
  contents:
  - geopressure_map
  - geopressure_map_mismatch
  - geopressure_map_likelihood
  - geopressure_map_preprocess
- subtitle: GeoPressure time series
  desc: Retrieving time series pressure at a given location.
  contents:
  - geopressure_timeseries
- title: GeoLight
  desc: Geopositioning based on light data.
  contents:
  - geolight_map
  - twilight_create
  - twilight_label_write
  - twilight_label_read
  - light2mat
- title: Graph
  desc: Constructing the Hidden-Markov model with a `graph` and computing trajectory products.
  contents:
  - graph_create
- subtitle: Graph movement
  desc: Defining the movement model, optionally using wind data and bird morphology.
  contents:
  - graph_set_movement
  - graph_transition
  - tag_download_wind
  - graph_add_wind
  - bird_create
  - print.bird
  - speed2prob
  - edge_add_wind
  - plot_graph_movement
- subtitle: Graph products
  desc: Compute the three main products of the Hidden-Markov model.
  contents:
  - graph_most_likely
  - graph_marginal
  - graph_simulation
- subtitle: Graph utilities
  desc: Utility functions for a `graph` object
  contents:
  - graph_assert
  - print.graph
- title: Map
  desc: Container for spatio-temporal (stationary periods) data.
  contents:
  - map_create
  - print.map
  - plot.map
  - rast.map
  - map_expand
- title: Path
  desc: Data.frame of positions defining a bird trajectory.
  contents:
  - ind2path
  - path2edge
  - plot_path
- title: Pressurepath
  desc: Data.frame of pressure time series along a path.
  contents:
  - pressurepath_create
  - pressurepath_update
  - plot_pressurepath
  - path2elevation
- title: GeoPressureTemplate
  desc: Wrapper functions for the full GeoPressureR worflow
  contents:
  - geopressuretemplate
  - geopressuretemplate_tag
  - geopressuretemplate_graph
  - geopressuretemplate_pressurepath
  - geopressuretemplate_config
- title: Param
  desc: List of parameters used in `tag` and `graph`.
  contents:
  - param_create
  - print.param
- title: Utilities
  desc: General utility functions of the package.
  contents:
  - stap2flight
  - stap2duration
  - speed2bearing
  - windsupport
  - path2twilight
  - geopressureviz
  - GeoPressureR