From 714e927711fa067898a041533cb3987f9c93877c Mon Sep 17 00:00:00 2001
From: Steffen Eser <steffen.eser@rwth-aachen.de>
Date: Mon, 18 Nov 2024 14:58:46 +0000
Subject: [PATCH] Update 'docs' folder with
 43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory
 and delete old branches.

---
 .../coverage/badge.svg                        |   4 +-
 .../d_0143754ea13c2179___init___py.html       |   4 +-
 .../coverage/d_0143754ea13c2179_agent_py.html |   4 +-
 .../d_0143754ea13c2179_data_broker_py.html    |   4 +-
 .../d_0143754ea13c2179_datamodels_py.html     |   4 +-
 .../d_0143754ea13c2179_environment_py.html    |   4 +-
 .../d_0143754ea13c2179_errors_py.html         |   4 +-
 .../d_0143754ea13c2179_logging__py.html       |   4 +-
 .../coverage/d_0143754ea13c2179_model_py.html |   4 +-
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 .../coverage/d_48a45824ce0c44d6_mqtt_py.html  |   4 +-
 .../d_6d86c0898c126a4f___init___py.html       |   4 +-
 .../d_6d86c0898c126a4f_agent_logger_py.html   | 180 ++++----
 .../d_6d86c0898c126a4f_try_sensor_py.html     |   4 +-
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 .../d_9b578c6177cd03d5_fmu_model_py.html      |   4 +-
 .../d_9b578c6177cd03d5_scipy_model_py.html    |   4 +-
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 .../d_cb377e6be3e6d02a_fuzzy_matching_py.html |   4 +-
 .../d_cb377e6be3e6d02a_load_config_py.html    |   4 +-
 ...e6be3e6d02a_local_broadcast_broker_py.html |   4 +-
 .../d_cb377e6be3e6d02a_local_broker_py.html   |   4 +-
 ...b377e6be3e6d02a_multi_agent_system_py.html |   4 +-
 ...6be3e6d02a_multi_processing_broker_py.html |   4 +-
 .../d_cb377e6be3e6d02a_plugin_import_py.html  |   4 +-
 .../d_cb377e6be3e6d02a_validators_py.html     |   4 +-
 .../coverage/index.html                       |  14 +-
 .../coverage/status.json                      |   2 +-
 .../docs/.doctrees/agentlib.core.doctree      | Bin 793354 -> 793354 bytes
 .../docs/.doctrees/agentlib.doctree           | Bin 405871 -> 405871 bytes
 .../docs/.doctrees/code/agentlib.core.doctree | Bin 806234 -> 806234 bytes
 .../docs/.doctrees/code/agentlib.doctree      | Bin 412434 -> 412434 bytes
 .../docs/.doctrees/environment.pickle         | Bin 5022884 -> 5022884 bytes
 .../docs/agentlib.core.html                   |   2 +-
 .../docs/agentlib.html                        |   2 +-
 .../docs/code/agentlib.core.html              |   2 +-
 .../docs/code/agentlib.html                   |   2 +-
 .../pylint/pylint.html                        | 233 +++++++++-
 .../pylint/pylint.json                        | 426 +++++++++++++-----
 .../pylint/pylint.svg                         |   4 +-
 .../pylint/pylint.txt                         |  31 +-
 59 files changed, 753 insertions(+), 317 deletions(-)

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+            <button type="button" class="run button_toggle_run" value="run" data-shortcut="r" title="Toggle lines run">84<span class="text"> run</span></button>
+            <button type="button" class="mis show_mis button_toggle_mis" value="mis" data-shortcut="m" title="Toggle lines missing">5<span class="text"> missing</span></button>
             <button type="button" class="exc show_exc button_toggle_exc" value="exc" data-shortcut="x" title="Toggle lines excluded">4<span class="text"> excluded</span></button>
         </h2>
         <p class="text">
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_6d86c0898c126a4f_try_sensor_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
             <a class="nav" href="https://coverage.readthedocs.io/en/7.4.4">coverage.py v7.4.4</a>,
-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
         </p>
         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -83,90 +83,90 @@ <h2>
     <p class="pln"><span class="n"><a id="t1" href="#t1">1</a></span><span class="t"><span class="str">"""This module contains a custom Module to log</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t2" href="#t2">2</a></span><span class="t"><span class="str">all variables inside an agent's data_broker."""</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t3" href="#t3">3</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t4" href="#t4">4</a></span><span class="t"><span class="key">import</span> <span class="nam">collections</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t5" href="#t5">5</a></span><span class="t"><span class="key">import</span> <span class="nam">json</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t6" href="#t6">6</a></span><span class="t"><span class="key">import</span> <span class="nam">logging</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t7" href="#t7">7</a></span><span class="t"><span class="key">import</span> <span class="nam">os</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t8" href="#t8">8</a></span><span class="t"><span class="key">from</span> <span class="nam">ast</span> <span class="key">import</span> <span class="nam">literal_eval</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t9" href="#t9">9</a></span><span class="t"><span class="key">from</span> <span class="nam">typing</span> <span class="key">import</span> <span class="nam">Union</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t4" href="#t4">4</a></span><span class="t"><span class="key">import</span> <span class="nam">collections</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t5" href="#t5">5</a></span><span class="t"><span class="key">import</span> <span class="nam">json</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t6" href="#t6">6</a></span><span class="t"><span class="key">import</span> <span class="nam">logging</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t7" href="#t7">7</a></span><span class="t"><span class="key">import</span> <span class="nam">os</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t8" href="#t8">8</a></span><span class="t"><span class="key">from</span> <span class="nam">ast</span> <span class="key">import</span> <span class="nam">literal_eval</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t9" href="#t9">9</a></span><span class="t"><span class="key">from</span> <span class="nam">typing</span> <span class="key">import</span> <span class="nam">Union</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t10" href="#t10">10</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t11" href="#t11">11</a></span><span class="t"><span class="key">import</span> <span class="nam">pandas</span> <span class="key">as</span> <span class="nam">pd</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t12" href="#t12">12</a></span><span class="t"><span class="key">from</span> <span class="nam">pydantic</span> <span class="key">import</span> <span class="nam">field_validator</span><span class="op">,</span> <span class="nam">Field</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t13" href="#t13">13</a></span><span class="t"><span class="key">from</span> <span class="nam">pydantic_core</span><span class="op">.</span><span class="nam">core_schema</span> <span class="key">import</span> <span class="nam">FieldValidationInfo</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t11" href="#t11">11</a></span><span class="t"><span class="key">import</span> <span class="nam">pandas</span> <span class="key">as</span> <span class="nam">pd</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t12" href="#t12">12</a></span><span class="t"><span class="key">from</span> <span class="nam">pydantic</span> <span class="key">import</span> <span class="nam">field_validator</span><span class="op">,</span> <span class="nam">Field</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t13" href="#t13">13</a></span><span class="t"><span class="key">from</span> <span class="nam">pydantic_core</span><span class="op">.</span><span class="nam">core_schema</span> <span class="key">import</span> <span class="nam">FieldValidationInfo</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t14" href="#t14">14</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t15" href="#t15">15</a></span><span class="t"><span class="key">from</span> <span class="nam">agentlib</span> <span class="key">import</span> <span class="nam">AgentVariable</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t16" href="#t16">16</a></span><span class="t"><span class="key">from</span> <span class="nam">agentlib</span><span class="op">.</span><span class="nam">core</span> <span class="key">import</span> <span class="nam">BaseModule</span><span class="op">,</span> <span class="nam">Agent</span><span class="op">,</span> <span class="nam">BaseModuleConfig</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t15" href="#t15">15</a></span><span class="t"><span class="key">from</span> <span class="nam">agentlib</span> <span class="key">import</span> <span class="nam">AgentVariable</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t16" href="#t16">16</a></span><span class="t"><span class="key">from</span> <span class="nam">agentlib</span><span class="op">.</span><span class="nam">core</span> <span class="key">import</span> <span class="nam">BaseModule</span><span class="op">,</span> <span class="nam">Agent</span><span class="op">,</span> <span class="nam">BaseModuleConfig</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t17" href="#t17">17</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t18" href="#t18">18</a></span><span class="t"><span class="nam">logger</span> <span class="op">=</span> <span class="nam">logging</span><span class="op">.</span><span class="nam">getLogger</span><span class="op">(</span><span class="nam">__name__</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t18" href="#t18">18</a></span><span class="t"><span class="nam">logger</span> <span class="op">=</span> <span class="nam">logging</span><span class="op">.</span><span class="nam">getLogger</span><span class="op">(</span><span class="nam">__name__</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t19" href="#t19">19</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t20" href="#t20">20</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t21" href="#t21">21</a></span><span class="t"><span class="key">class</span> <span class="nam">AgentLoggerConfig</span><span class="op">(</span><span class="nam">BaseModuleConfig</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t21" href="#t21">21</a></span><span class="t"><span class="key">class</span> <span class="nam">AgentLoggerConfig</span><span class="op">(</span><span class="nam">BaseModuleConfig</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t22" href="#t22">22</a></span><span class="t">    <span class="str">"""Define parameters for the AgentLogger"""</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t23" href="#t23">23</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t">    <span class="nam">t_sample</span><span class="op">:</span> <span class="nam">Union</span><span class="op">[</span><span class="nam">float</span><span class="op">,</span> <span class="nam">int</span><span class="op">]</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t24" href="#t24">24</a></span><span class="t">    <span class="nam">t_sample</span><span class="op">:</span> <span class="nam">Union</span><span class="op">[</span><span class="nam">float</span><span class="op">,</span> <span class="nam">int</span><span class="op">]</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t25" href="#t25">25</a></span><span class="t">        <span class="nam">title</span><span class="op">=</span><span class="str">"t_sample"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t26" href="#t26">26</a></span><span class="t">        <span class="nam">default</span><span class="op">=</span><span class="num">300</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t27" href="#t27">27</a></span><span class="t">        <span class="nam">description</span><span class="op">=</span><span class="str">"The log is saved every other t_sample seconds."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t28" href="#t28">28</a></span><span class="t">    <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t">    <span class="nam">values_only</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t29" href="#t29">29</a></span><span class="t">    <span class="nam">values_only</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t30" href="#t30">30</a></span><span class="t">        <span class="nam">title</span><span class="op">=</span><span class="str">"values_only"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t31" href="#t31">31</a></span><span class="t">        <span class="nam">default</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t32" href="#t32">32</a></span><span class="t">        <span class="nam">description</span><span class="op">=</span><span class="str">"If True, only the values are logged. Else, all"</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t33" href="#t33">33</a></span><span class="t">        <span class="str">"fields in the AgentVariable are logged."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t34" href="#t34">34</a></span><span class="t">    <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t">    <span class="nam">clean_up</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t35" href="#t35">35</a></span><span class="t">    <span class="nam">clean_up</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t36" href="#t36">36</a></span><span class="t">        <span class="nam">title</span><span class="op">=</span><span class="str">"clean_up"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t37" href="#t37">37</a></span><span class="t">        <span class="nam">default</span><span class="op">=</span><span class="key">True</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t38" href="#t38">38</a></span><span class="t">        <span class="nam">description</span><span class="op">=</span><span class="str">"If True, file is deleted once load_log is called."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t39" href="#t39">39</a></span><span class="t">    <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">    <span class="nam">overwrite_log</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t40" href="#t40">40</a></span><span class="t">    <span class="nam">overwrite_log</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t41" href="#t41">41</a></span><span class="t">        <span class="nam">title</span><span class="op">=</span><span class="str">"Overwrite file"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t42" href="#t42">42</a></span><span class="t">        <span class="nam">default</span><span class="op">=</span><span class="key">False</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t43" href="#t43">43</a></span><span class="t">        <span class="nam">description</span><span class="op">=</span><span class="str">"If true, old logs are auto deleted when a new log should be written with that name."</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t44" href="#t44">44</a></span><span class="t">    <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t">    <span class="nam">filename</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t45" href="#t45">45</a></span><span class="t">    <span class="nam">filename</span><span class="op">:</span> <span class="nam">str</span> <span class="op">=</span> <span class="nam">Field</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t46" href="#t46">46</a></span><span class="t">        <span class="nam">title</span><span class="op">=</span><span class="str">"filename"</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t47" href="#t47">47</a></span><span class="t">        <span class="nam">description</span><span class="op">=</span><span class="str">"The filename where the log is stored."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t48" href="#t48">48</a></span><span class="t">    <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t49" href="#t49">49</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t">    <span class="op">@</span><span class="nam">field_validator</span><span class="op">(</span><span class="str">"filename"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t">    <span class="op">@</span><span class="nam">classmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">    <span class="key">def</span> <span class="nam">check_existence_of_file</span><span class="op">(</span><span class="nam">cls</span><span class="op">,</span> <span class="nam">filename</span><span class="op">,</span> <span class="nam">info</span><span class="op">:</span> <span class="nam">FieldValidationInfo</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t50" href="#t50">50</a></span><span class="t">    <span class="op">@</span><span class="nam">field_validator</span><span class="op">(</span><span class="str">"filename"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t51" href="#t51">51</a></span><span class="t">    <span class="op">@</span><span class="nam">classmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t52" href="#t52">52</a></span><span class="t">    <span class="key">def</span> <span class="nam">check_existence_of_file</span><span class="op">(</span><span class="nam">cls</span><span class="op">,</span> <span class="nam">filename</span><span class="op">,</span> <span class="nam">info</span><span class="op">:</span> <span class="nam">FieldValidationInfo</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t53" href="#t53">53</a></span><span class="t">        <span class="str">"""Checks whether the file already exists."""</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t54" href="#t54">54</a></span><span class="t">        <span class="com"># pylint: disable=no-self-argument,no-self-use</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">        <span class="key">if</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">isfile</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t55" href="#t55">55</a></span><span class="t">        <span class="key">if</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">isfile</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t56" href="#t56">56</a></span><span class="t">            <span class="com"># remove result file, so a new one can be created</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">            <span class="key">if</span> <span class="nam">info</span><span class="op">.</span><span class="nam">data</span><span class="op">[</span><span class="str">"overwrite_log"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">remove</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">                <span class="key">return</span> <span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">            <span class="key">raise</span> <span class="nam">FileExistsError</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t57" href="#t57">57</a></span><span class="t">            <span class="key">if</span> <span class="nam">info</span><span class="op">.</span><span class="nam">data</span><span class="op">[</span><span class="str">"overwrite_log"</span><span class="op">]</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t58" href="#t58">58</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">remove</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t59" href="#t59">59</a></span><span class="t">                <span class="key">return</span> <span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t60" href="#t60">60</a></span><span class="t">            <span class="key">raise</span> <span class="nam">FileExistsError</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t61" href="#t61">61</a></span><span class="t">                <span class="str">f"Given filename at {filename} "</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t62" href="#t62">62</a></span><span class="t">                <span class="str">f"already exists. We won't overwrite it automatically. "</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t63" href="#t63">63</a></span><span class="t">                <span class="str">f"You can use the key word 'overwrite_log' to "</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t64" href="#t64">64</a></span><span class="t">                <span class="str">f"activate automatic overwrite."</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t65" href="#t65">65</a></span><span class="t">            <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t66" href="#t66">66</a></span><span class="t">        <span class="com"># Create path in case it does not exist</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">        <span class="nam">fpath</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">dirname</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">        <span class="key">if</span> <span class="nam">fpath</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">os</span><span class="op">.</span><span class="nam">makedirs</span><span class="op">(</span><span class="nam">fpath</span><span class="op">,</span> <span class="nam">exist_ok</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">        <span class="key">return</span> <span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t67" href="#t67">67</a></span><span class="t">        <span class="nam">fpath</span> <span class="op">=</span> <span class="nam">os</span><span class="op">.</span><span class="nam">path</span><span class="op">.</span><span class="nam">dirname</span><span class="op">(</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t68" href="#t68">68</a></span><span class="t">        <span class="key">if</span> <span class="nam">fpath</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t69" href="#t69">69</a></span><span class="t">            <span class="nam">os</span><span class="op">.</span><span class="nam">makedirs</span><span class="op">(</span><span class="nam">fpath</span><span class="op">,</span> <span class="nam">exist_ok</span><span class="op">=</span><span class="key">True</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t70" href="#t70">70</a></span><span class="t">        <span class="key">return</span> <span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t71" href="#t71">71</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t72" href="#t72">72</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t"><span class="key">class</span> <span class="nam">AgentLogger</span><span class="op">(</span><span class="nam">BaseModule</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t73" href="#t73">73</a></span><span class="t"><span class="key">class</span> <span class="nam">AgentLogger</span><span class="op">(</span><span class="nam">BaseModule</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t74" href="#t74">74</a></span><span class="t">    <span class="str">"""</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t75" href="#t75">75</a></span><span class="t"><span class="str">    A custom logger for Agents to write variables</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t76" href="#t76">76</a></span><span class="t"><span class="str">    which are updated in data_broker into a file.</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t77" href="#t77">77</a></span><span class="t"><span class="str">    """</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t78" href="#t78">78</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">    <span class="nam">config</span><span class="op">:</span> <span class="nam">AgentLoggerConfig</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t79" href="#t79">79</a></span><span class="t">    <span class="nam">config</span><span class="op">:</span> <span class="nam">AgentLoggerConfig</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t80" href="#t80">80</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="op">*</span><span class="op">,</span> <span class="nam">config</span><span class="op">:</span> <span class="nam">dict</span><span class="op">,</span> <span class="nam">agent</span><span class="op">:</span> <span class="nam">Agent</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t81" href="#t81">81</a></span><span class="t">    <span class="key">def</span> <span class="nam">__init__</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="op">*</span><span class="op">,</span> <span class="nam">config</span><span class="op">:</span> <span class="nam">dict</span><span class="op">,</span> <span class="nam">agent</span><span class="op">:</span> <span class="nam">Agent</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t82" href="#t82">82</a></span><span class="t">        <span class="str">"""Overwrite init to enable a custom default filename</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t83" href="#t83">83</a></span><span class="t"><span class="str">        which uses the agent_id."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">config</span><span class="op">,</span> <span class="nam">agent</span><span class="op">=</span><span class="nam">agent</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_filename</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">rt</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">t_sample</span> <span class="op">&lt;</span> <span class="num">60</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t84" href="#t84">84</a></span><span class="t">        <span class="nam">super</span><span class="op">(</span><span class="op">)</span><span class="op">.</span><span class="nam">__init__</span><span class="op">(</span><span class="nam">config</span><span class="op">=</span><span class="nam">config</span><span class="op">,</span> <span class="nam">agent</span><span class="op">=</span><span class="nam">agent</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t85" href="#t85">85</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_filename</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t86" href="#t86">86</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t87" href="#t87">87</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">rt</span> <span class="key">and</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">t_sample</span> <span class="op">&lt;</span> <span class="num">60</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="mis show_mis"><span class="n"><a id="t88" href="#t88">88</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">logger</span><span class="op">.</span><span class="nam">warning</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t89" href="#t89">89</a></span><span class="t">                <span class="str">"Sampling time of agent_logger %s is very low %s. This can hinder "</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t90" href="#t90">90</a></span><span class="t">                <span class="str">"performance."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
@@ -174,50 +174,50 @@ <h2>
     <p class="pln"><span class="n"><a id="t92" href="#t92">92</a></span><span class="t">                <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">t_sample</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t93" href="#t93">93</a></span><span class="t">            <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t94" href="#t94">94</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">    <span class="op">@</span><span class="nam">property</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">    <span class="key">def</span> <span class="nam">filename</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t95" href="#t95">95</a></span><span class="t">    <span class="op">@</span><span class="nam">property</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t96" href="#t96">96</a></span><span class="t">    <span class="key">def</span> <span class="nam">filename</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t97" href="#t97">97</a></span><span class="t">        <span class="str">"""Return the filename where to log."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_filename</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t98" href="#t98">98</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_filename</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t99" href="#t99">99</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">    <span class="key">def</span> <span class="nam">process</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t100" href="#t100">100</a></span><span class="t">    <span class="key">def</span> <span class="nam">process</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t101" href="#t101">101</a></span><span class="t">        <span class="str">"""Calls the logger every other t_sample</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t102" href="#t102">102</a></span><span class="t"><span class="str">        is used."""</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t103" href="#t103">103</a></span><span class="t">        <span class="key">while</span> <span class="key">True</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="mis show_mis"><span class="n"><a id="t104" href="#t104">104</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">_log</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="mis show_mis"><span class="n"><a id="t105" href="#t105">105</a></span><span class="t">            <span class="key">yield</span> <span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">timeout</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">t_sample</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t106" href="#t106">106</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">    <span class="key">def</span> <span class="nam">register_callbacks</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t107" href="#t107">107</a></span><span class="t">    <span class="key">def</span> <span class="nam">register_callbacks</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t108" href="#t108">108</a></span><span class="t">        <span class="str">"""Callbacks trigger the log_cache function"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="nam">callback</span> <span class="op">=</span> <span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t109" href="#t109">109</a></span><span class="t">        <span class="nam">callback</span> <span class="op">=</span> <span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t110" href="#t110">110</a></span><span class="t">            <span class="nam">self</span><span class="op">.</span><span class="nam">_callback_values</span> <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">values_only</span> <span class="key">else</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_callback_full</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t111" href="#t111">111</a></span><span class="t">        <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">agent</span><span class="op">.</span><span class="nam">data_broker</span><span class="op">.</span><span class="nam">register_callback</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t112" href="#t112">112</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">agent</span><span class="op">.</span><span class="nam">data_broker</span><span class="op">.</span><span class="nam">register_callback</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t113" href="#t113">113</a></span><span class="t">            <span class="nam">alias</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">source</span><span class="op">=</span><span class="key">None</span><span class="op">,</span> <span class="nam">callback</span><span class="op">=</span><span class="nam">callback</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t114" href="#t114">114</a></span><span class="t">        <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t115" href="#t115">115</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">    <span class="key">def</span> <span class="nam">_callback_values</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">variable</span><span class="op">:</span> <span class="nam">AgentVariable</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t116" href="#t116">116</a></span><span class="t">    <span class="key">def</span> <span class="nam">_callback_values</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">variable</span><span class="op">:</span> <span class="nam">AgentVariable</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t117" href="#t117">117</a></span><span class="t">        <span class="str">"""Save variable values to log later."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">isinstance</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">value</span><span class="op">,</span> <span class="op">(</span><span class="nam">float</span><span class="op">,</span> <span class="nam">int</span><span class="op">,</span> <span class="nam">str</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t118" href="#t118">118</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">isinstance</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">value</span><span class="op">,</span> <span class="op">(</span><span class="nam">float</span><span class="op">,</span> <span class="nam">int</span><span class="op">,</span> <span class="nam">str</span><span class="op">)</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="mis show_mis"><span class="n"><a id="t119" href="#t119">119</a></span><span class="t">            <span class="key">return</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">        <span class="nam">current_time</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span><span class="op">.</span><span class="nam">setdefault</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">time</span><span class="op">)</span><span class="op">,</span> <span class="op">{</span><span class="op">}</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t120" href="#t120">120</a></span><span class="t">        <span class="nam">current_time</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span><span class="op">.</span><span class="nam">setdefault</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">time</span><span class="op">)</span><span class="op">,</span> <span class="op">{</span><span class="op">}</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t121" href="#t121">121</a></span><span class="t">        <span class="com"># we merge alias and source tuple into a string so we can .json it</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="nam">current_time</span><span class="op">[</span><span class="nam">str</span><span class="op">(</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">alias</span><span class="op">,</span> <span class="nam">str</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">source</span><span class="op">)</span><span class="op">)</span><span class="op">)</span><span class="op">]</span> <span class="op">=</span> <span class="nam">variable</span><span class="op">.</span><span class="nam">value</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t122" href="#t122">122</a></span><span class="t">        <span class="nam">current_time</span><span class="op">[</span><span class="nam">str</span><span class="op">(</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">alias</span><span class="op">,</span> <span class="nam">str</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">source</span><span class="op">)</span><span class="op">)</span><span class="op">)</span><span class="op">]</span> <span class="op">=</span> <span class="nam">variable</span><span class="op">.</span><span class="nam">value</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t123" href="#t123">123</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">    <span class="key">def</span> <span class="nam">_callback_full</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">variable</span><span class="op">:</span> <span class="nam">AgentVariable</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t124" href="#t124">124</a></span><span class="t">    <span class="key">def</span> <span class="nam">_callback_full</span><span class="op">(</span><span class="nam">self</span><span class="op">,</span> <span class="nam">variable</span><span class="op">:</span> <span class="nam">AgentVariable</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t125" href="#t125">125</a></span><span class="t">        <span class="str">"""Save full variable to log later."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="nam">current_time</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span><span class="op">.</span><span class="nam">setdefault</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">time</span><span class="op">)</span><span class="op">,</span> <span class="op">{</span><span class="op">}</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="nam">current_time</span><span class="op">[</span><span class="nam">str</span><span class="op">(</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">alias</span><span class="op">,</span> <span class="nam">str</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">source</span><span class="op">)</span><span class="op">)</span><span class="op">)</span><span class="op">]</span> <span class="op">=</span> <span class="nam">variable</span><span class="op">.</span><span class="nam">dict</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t126" href="#t126">126</a></span><span class="t">        <span class="nam">current_time</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span><span class="op">.</span><span class="nam">setdefault</span><span class="op">(</span><span class="nam">str</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">env</span><span class="op">.</span><span class="nam">time</span><span class="op">)</span><span class="op">,</span> <span class="op">{</span><span class="op">}</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t127" href="#t127">127</a></span><span class="t">        <span class="nam">current_time</span><span class="op">[</span><span class="nam">str</span><span class="op">(</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">alias</span><span class="op">,</span> <span class="nam">str</span><span class="op">(</span><span class="nam">variable</span><span class="op">.</span><span class="nam">source</span><span class="op">)</span><span class="op">)</span><span class="op">)</span><span class="op">]</span> <span class="op">=</span> <span class="nam">variable</span><span class="op">.</span><span class="nam">dict</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t128" href="#t128">128</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">    <span class="key">def</span> <span class="nam">_log</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t129" href="#t129">129</a></span><span class="t">    <span class="key">def</span> <span class="nam">_log</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t130" href="#t130">130</a></span><span class="t">        <span class="str">"""Writes the currently in memory saved values to file"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">,</span> <span class="str">"a"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">file</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">            <span class="nam">json</span><span class="op">.</span><span class="nam">dump</span><span class="op">(</span><span class="nam">_variables_to_log</span><span class="op">,</span> <span class="nam">file</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">            <span class="nam">file</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">"\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t131" href="#t131">131</a></span><span class="t">        <span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t132" href="#t132">132</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_variables_to_log</span> <span class="op">=</span> <span class="op">{</span><span class="op">}</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t133" href="#t133">133</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">,</span> <span class="str">"a"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">file</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t134" href="#t134">134</a></span><span class="t">            <span class="nam">json</span><span class="op">.</span><span class="nam">dump</span><span class="op">(</span><span class="nam">_variables_to_log</span><span class="op">,</span> <span class="nam">file</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t135" href="#t135">135</a></span><span class="t">            <span class="nam">file</span><span class="op">.</span><span class="nam">write</span><span class="op">(</span><span class="str">"\n"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t136" href="#t136">136</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">    <span class="op">@</span><span class="nam">classmethod</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">    <span class="key">def</span> <span class="nam">load_from_file</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t137" href="#t137">137</a></span><span class="t">    <span class="op">@</span><span class="nam">classmethod</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t138" href="#t138">138</a></span><span class="t">    <span class="key">def</span> <span class="nam">load_from_file</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t139" href="#t139">139</a></span><span class="t">        <span class="nam">cls</span><span class="op">,</span> <span class="nam">filename</span><span class="op">:</span> <span class="nam">str</span><span class="op">,</span> <span class="nam">values_only</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="key">True</span><span class="op">,</span> <span class="nam">merge_sources</span><span class="op">:</span> <span class="nam">bool</span> <span class="op">=</span> <span class="key">True</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t140" href="#t140">140</a></span><span class="t">    <span class="op">)</span> <span class="op">-></span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t141" href="#t141">141</a></span><span class="t">        <span class="str">"""Loads the log file and consolidates it as a pandas DataFrame.</span>&nbsp;</span><span class="r"></span></p>
@@ -232,49 +232,49 @@ <h2>
     <p class="pln"><span class="n"><a id="t150" href="#t150">150</a></span><span class="t"><span class="str">                resulting in a multi-indexed return column index</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t151" href="#t151">151</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t152" href="#t152">152</a></span><span class="t"><span class="str">        """</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="nam">chunks</span> <span class="op">=</span> <span class="op">[</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">,</span> <span class="str">"r"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">file</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">            <span class="key">for</span> <span class="nam">data_line</span> <span class="key">in</span> <span class="nam">file</span><span class="op">.</span><span class="nam">readlines</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="nam">chunks</span><span class="op">.</span><span class="nam">append</span><span class="op">(</span><span class="nam">json</span><span class="op">.</span><span class="nam">loads</span><span class="op">(</span><span class="nam">data_line</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="nam">full_dict</span> <span class="op">=</span> <span class="nam">collections</span><span class="op">.</span><span class="nam">ChainMap</span><span class="op">(</span><span class="op">*</span><span class="nam">chunks</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">.</span><span class="nam">from_dict</span><span class="op">(</span><span class="nam">full_dict</span><span class="op">,</span> <span class="nam">orient</span><span class="op">=</span><span class="str">"index"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="nam">df</span><span class="op">.</span><span class="nam">index</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">index</span><span class="op">.</span><span class="nam">astype</span><span class="op">(</span><span class="nam">float</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="nam">columns</span> <span class="op">=</span> <span class="op">(</span><span class="nam">literal_eval</span><span class="op">(</span><span class="nam">column</span><span class="op">)</span> <span class="key">for</span> <span class="nam">column</span> <span class="key">in</span> <span class="nam">df</span><span class="op">.</span><span class="nam">columns</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="nam">df</span><span class="op">.</span><span class="nam">columns</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">MultiIndex</span><span class="op">.</span><span class="nam">from_tuples</span><span class="op">(</span><span class="nam">columns</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t153" href="#t153">153</a></span><span class="t">        <span class="nam">chunks</span> <span class="op">=</span> <span class="op">[</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t154" href="#t154">154</a></span><span class="t">        <span class="key">with</span> <span class="nam">open</span><span class="op">(</span><span class="nam">filename</span><span class="op">,</span> <span class="str">"r"</span><span class="op">)</span> <span class="key">as</span> <span class="nam">file</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t155" href="#t155">155</a></span><span class="t">            <span class="key">for</span> <span class="nam">data_line</span> <span class="key">in</span> <span class="nam">file</span><span class="op">.</span><span class="nam">readlines</span><span class="op">(</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t156" href="#t156">156</a></span><span class="t">                <span class="nam">chunks</span><span class="op">.</span><span class="nam">append</span><span class="op">(</span><span class="nam">json</span><span class="op">.</span><span class="nam">loads</span><span class="op">(</span><span class="nam">data_line</span><span class="op">)</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t157" href="#t157">157</a></span><span class="t">        <span class="nam">full_dict</span> <span class="op">=</span> <span class="nam">collections</span><span class="op">.</span><span class="nam">ChainMap</span><span class="op">(</span><span class="op">*</span><span class="nam">chunks</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t158" href="#t158">158</a></span><span class="t">        <span class="nam">df</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">.</span><span class="nam">from_dict</span><span class="op">(</span><span class="nam">full_dict</span><span class="op">,</span> <span class="nam">orient</span><span class="op">=</span><span class="str">"index"</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t159" href="#t159">159</a></span><span class="t">        <span class="nam">df</span><span class="op">.</span><span class="nam">index</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">index</span><span class="op">.</span><span class="nam">astype</span><span class="op">(</span><span class="nam">float</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t160" href="#t160">160</a></span><span class="t">        <span class="nam">columns</span> <span class="op">=</span> <span class="op">(</span><span class="nam">literal_eval</span><span class="op">(</span><span class="nam">column</span><span class="op">)</span> <span class="key">for</span> <span class="nam">column</span> <span class="key">in</span> <span class="nam">df</span><span class="op">.</span><span class="nam">columns</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t161" href="#t161">161</a></span><span class="t">        <span class="nam">df</span><span class="op">.</span><span class="nam">columns</span> <span class="op">=</span> <span class="nam">pd</span><span class="op">.</span><span class="nam">MultiIndex</span><span class="op">.</span><span class="nam">from_tuples</span><span class="op">(</span><span class="nam">columns</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t162" href="#t162">162</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">values_only</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t163" href="#t163">163</a></span><span class="t">        <span class="key">if</span> <span class="key">not</span> <span class="nam">values_only</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t164" href="#t164">164</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">            <span class="key">def</span> <span class="nam">_load_agent_variable</span><span class="op">(</span><span class="nam">var</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">                <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">                    <span class="key">return</span> <span class="nam">AgentVariable</span><span class="op">.</span><span class="nam">validate_data</span><span class="op">(</span><span class="nam">var</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t165" href="#t165">165</a></span><span class="t">            <span class="key">def</span> <span class="nam">_load_agent_variable</span><span class="op">(</span><span class="nam">var</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t166" href="#t166">166</a></span><span class="t">                <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t167" href="#t167">167</a></span><span class="t">                    <span class="key">return</span> <span class="nam">AgentVariable</span><span class="op">.</span><span class="nam">validate_data</span><span class="op">(</span><span class="nam">var</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="exc show_exc"><span class="n"><a id="t168" href="#t168">168</a></span><span class="t">                <span class="key">except</span> <span class="nam">TypeError</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="exc show_exc"><span class="n"><a id="t169" href="#t169">169</a></span><span class="t">                    <span class="key">pass</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t170" href="#t170">170</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">applymap</span><span class="op">(</span><span class="nam">_load_agent_variable</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t171" href="#t171">171</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">applymap</span><span class="op">(</span><span class="nam">_load_agent_variable</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t172" href="#t172">172</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="key">if</span> <span class="nam">merge_sources</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">droplevel</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="nam">axis</span><span class="op">=</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="op">:</span><span class="op">,</span> <span class="op">~</span><span class="nam">df</span><span class="op">.</span><span class="nam">columns</span><span class="op">.</span><span class="nam">duplicated</span><span class="op">(</span><span class="nam">keep</span><span class="op">=</span><span class="str">"first"</span><span class="op">)</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="key">return</span> <span class="nam">df</span><span class="op">.</span><span class="nam">sort_index</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t173" href="#t173">173</a></span><span class="t">        <span class="key">if</span> <span class="nam">merge_sources</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t174" href="#t174">174</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">droplevel</span><span class="op">(</span><span class="num">1</span><span class="op">,</span> <span class="nam">axis</span><span class="op">=</span><span class="num">1</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t175" href="#t175">175</a></span><span class="t">            <span class="nam">df</span> <span class="op">=</span> <span class="nam">df</span><span class="op">.</span><span class="nam">loc</span><span class="op">[</span><span class="op">:</span><span class="op">,</span> <span class="op">~</span><span class="nam">df</span><span class="op">.</span><span class="nam">columns</span><span class="op">.</span><span class="nam">duplicated</span><span class="op">(</span><span class="nam">keep</span><span class="op">=</span><span class="str">"first"</span><span class="op">)</span><span class="op">]</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t176" href="#t176">176</a></span><span class="t">        <span class="key">return</span> <span class="nam">df</span><span class="op">.</span><span class="nam">sort_index</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t177" href="#t177">177</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_results</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t178" href="#t178">178</a></span><span class="t">    <span class="key">def</span> <span class="nam">get_results</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span> <span class="op">-></span> <span class="nam">pd</span><span class="op">.</span><span class="nam">DataFrame</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t179" href="#t179">179</a></span><span class="t">        <span class="str">"""Load the own filename"""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">load_from_file</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t180" href="#t180">180</a></span><span class="t">        <span class="key">return</span> <span class="nam">self</span><span class="op">.</span><span class="nam">load_from_file</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t181" href="#t181">181</a></span><span class="t">            <span class="nam">filename</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">,</span> <span class="nam">values_only</span><span class="op">=</span><span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">values_only</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t182" href="#t182">182</a></span><span class="t">        <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t183" href="#t183">183</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">    <span class="key">def</span> <span class="nam">cleanup_results</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t184" href="#t184">184</a></span><span class="t">    <span class="key">def</span> <span class="nam">cleanup_results</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t185" href="#t185">185</a></span><span class="t">        <span class="str">"""Deletes the log if wanted."""</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">clean_up</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">            <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">remove</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t186" href="#t186">186</a></span><span class="t">        <span class="key">if</span> <span class="nam">self</span><span class="op">.</span><span class="nam">config</span><span class="op">.</span><span class="nam">clean_up</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t187" href="#t187">187</a></span><span class="t">            <span class="key">try</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t188" href="#t188">188</a></span><span class="t">                <span class="nam">os</span><span class="op">.</span><span class="nam">remove</span><span class="op">(</span><span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="exc show_exc"><span class="n"><a id="t189" href="#t189">189</a></span><span class="t">            <span class="key">except</span> <span class="nam">OSError</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="exc show_exc"><span class="n"><a id="t190" href="#t190">190</a></span><span class="t">                <span class="nam">self</span><span class="op">.</span><span class="nam">logger</span><span class="op">.</span><span class="nam">error</span><span class="op">(</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t191" href="#t191">191</a></span><span class="t">                    <span class="str">"Could not delete filename %s. Please delete it yourself."</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t192" href="#t192">192</a></span><span class="t">                    <span class="nam">self</span><span class="op">.</span><span class="nam">filename</span><span class="op">,</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t193" href="#t193">193</a></span><span class="t">                <span class="op">)</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t194" href="#t194">194</a></span><span class="t">&nbsp;</span><span class="r"></span></p>
-    <p class="mis show_mis"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">    <span class="key">def</span> <span class="nam">terminate</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
+    <p class="run"><span class="n"><a id="t195" href="#t195">195</a></span><span class="t">    <span class="key">def</span> <span class="nam">terminate</span><span class="op">(</span><span class="nam">self</span><span class="op">)</span><span class="op">:</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t196" href="#t196">196</a></span><span class="t">        <span class="com"># when terminating, we log one last time, since otherwise the data since the</span>&nbsp;</span><span class="r"></span></p>
     <p class="pln"><span class="n"><a id="t197" href="#t197">197</a></span><span class="t">        <span class="com"># last log interval is lost</span>&nbsp;</span><span class="r"></span></p>
     <p class="mis show_mis"><span class="n"><a id="t198" href="#t198">198</a></span><span class="t">        <span class="nam">self</span><span class="op">.</span><span class="nam">_log</span><span class="op">(</span><span class="op">)</span>&nbsp;</span><span class="r"></span></p>
@@ -287,7 +287,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_6d86c0898c126a4f_try_sensor_py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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 </footer>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_6d86c0898c126a4f_try_sensor_py.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_6d86c0898c126a4f_try_sensor_py.html
index 04db111..2a18a86 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_6d86c0898c126a4f_try_sensor_py.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_6d86c0898c126a4f_try_sensor_py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_cb377e6be3e6d02a___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
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+            created at 2024-11-18 14:55 +0000
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             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -291,7 +291,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_cb377e6be3e6d02a___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_7772014d684c70cd___init___py.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_7772014d684c70cd___init___py.html
index b4c0b46..8c7c99e 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_7772014d684c70cd___init___py.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_7772014d684c70cd___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_48a45824ce0c44d6___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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         <aside class="hidden">
             <button type="button" class="button_next_chunk" data-shortcut="j"/>
@@ -195,7 +195,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_48a45824ce0c44d6___init___py.html">&#xbb; next</a>
             &nbsp; &nbsp; &nbsp;
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b___init___py.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b___init___py.html
index e6c9e23..bd8f882 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b___init___py.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b___init___py.html
@@ -65,7 +65,7 @@ <h2>
             <a id="nextFileLink" class="nav" href="d_942638eb947ece3b_csv_data_source_py.html">&#xbb; next</a>
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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             <button type="button" class="button_next_chunk" data-shortcut="j"/>
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             &nbsp; &nbsp; &nbsp;
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-            created at 2024-11-18 14:43 +0000
+            created at 2024-11-18 14:55 +0000
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index d68ed63..082e8b6 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b_csv_data_source_py.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/coverage/d_942638eb947ece3b_csv_data_source_py.html
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diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.core.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.core.html
index c6d66b2..eed21aa 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.core.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.core.html
@@ -1760,7 +1760,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 <dl class="py method pydantic_validator">
 <dt class="sig sig-object py" id="agentlib.core.model.ModelConfig.include_default_model_variables">
-<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.core.model.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
+<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.core.model.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
 <dd><p>Validator building block to merge default variables with config variables in a standard validator.
 Updates default variables when a variable with the same name is present in the config.
 Then returns the union of the default variables and the external config variables.</p>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.html
index b0b6904..f4822c1 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/agentlib.html
@@ -1371,7 +1371,7 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Permalink to thi
 
 <dl class="py method pydantic_validator">
 <dt class="sig sig-object py" id="agentlib.ModelConfig.include_default_model_variables">
-<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
+<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="code/agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
 <dd><p>Validator building block to merge default variables with config variables in a standard validator.
 Updates default variables when a variable with the same name is present in the config.
 Then returns the union of the default variables and the external config variables.</p>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.core.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.core.html
index 75ff702..cfb8137 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.core.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.core.html
@@ -1766,7 +1766,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 
 <dl class="py method pydantic_validator">
 <dt class="sig sig-object py" id="agentlib.core.model.ModelConfig.include_default_model_variables">
-<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="../_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.core.model.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
+<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="../_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.core.model.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
 <dd><p>Validator building block to merge default variables with config variables in a standard validator.
 Updates default variables when a variable with the same name is present in the config.
 Then returns the union of the default variables and the external config variables.</p>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.html
index 71cfc8f..9e4b615 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/docs/code/agentlib.html
@@ -1166,7 +1166,7 @@
 
 <dl class="py method pydantic_validator">
 <dt class="sig sig-object py" id="agentlib.ModelConfig.include_default_model_variables">
-<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="../_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
+<em class="property"><span class="pre">validator</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">include_default_model_variables</span></span><em class="autodoc_pydantic_validator_arrow property">&#160; <span class="pre">»</span>&#160; </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.outputs" title="agentlib.core.model.ModelConfig.outputs"><em class="xref py py-obj"><span class="pre">outputs</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.parameters" title="agentlib.core.model.ModelConfig.parameters"><em class="xref py py-obj"><span class="pre">parameters</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.states" title="agentlib.core.model.ModelConfig.states"><em class="xref py py-obj"><span class="pre">states</span></em></a><em class="property"><span class="pre">,</span> </em><a class="reference internal" href="agentlib.core.html#agentlib.core.model.ModelConfig.inputs" title="agentlib.core.model.ModelConfig.inputs"><em class="xref py py-obj"><span class="pre">inputs</span></em></a><a class="reference internal" href="../_modules/agentlib/core/model.html#ModelConfig.include_default_model_variables"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#agentlib.ModelConfig.include_default_model_variables" title="Permalink to this definition"></a></dt>
 <dd><p>Validator building block to merge default variables with config variables in a standard validator.
 Updates default variables when a variable with the same name is present in the config.
 Then returns the union of the default variables and the external config variables.</p>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.html b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.html
index 9fa95cf..a19426f 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.html
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.html
@@ -28,15 +28,15 @@ <h1>Pylint report from report.jinja2</h1>
 
         
         <h2>Score</h2>
-        8.44 / 10
+        8.42 / 10
             
-            (previous score: 8.44 / 10)
+            (previous score: 8.42 / 10)
             
         
 
         <h2>Messages</h2>
         
-        <h3>Module <code>ci.run_examples</code> (<code>ci/run_examples.py</code>)</h3>
+        <h3>Module <code>run_examples</code> (<code>ci/run_examples.py</code>)</h3>
         <table>
             <tr>
                 <th>Line</th>
@@ -1068,6 +1068,170 @@ <h3>Module <code>tests.test_agent</code> (<code>tests/test_agent.py</code>)</h3>
             
         </table>
         
+        <h3>Module <code>tests.test_agentlogger</code> (<code>tests/test_agentlogger.py</code>)</h3>
+        <table>
+            <tr>
+                <th>Line</th>
+                <th>Col.</th>
+                <th>Type</th>
+                <th>Symbol</th>
+                <th>ID</th>
+                <th>Obj</th>
+                <th>Message</th>
+            </tr>
+            
+            <tr>
+                <td>1</td>
+                <td>0</td>
+                <td>convention</td>
+                <td><code>missing-module-docstring</code></td>
+                <td>C0114</td>
+                <td></td>
+                <td><pre>Missing module docstring</pre></td>
+            </tr>
+            
+            <tr>
+                <td>13</td>
+                <td>0</td>
+                <td>convention</td>
+                <td><code>missing-class-docstring</code></td>
+                <td>C0115</td>
+                <td>TestAgentLogger</td>
+                <td><pre>Missing class docstring</pre></td>
+            </tr>
+            
+            <tr>
+                <td>60</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_logging_values</td>
+                <td><pre>Access to a protected member _callback_values of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>61</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_logging_values</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>79</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_logging_full</td>
+                <td><pre>Access to a protected member _callback_full of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>80</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_logging_full</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>95</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_file_overwrite</td>
+                <td><pre>Access to a protected member _callback_values of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>96</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_file_overwrite</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>111</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_file_overwrite</td>
+                <td><pre>Access to a protected member _callback_values of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>112</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_file_overwrite</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>129</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_cleanup</td>
+                <td><pre>Access to a protected member _callback_values of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>130</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_cleanup</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>150</td>
+                <td>12</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_load_from_file</td>
+                <td><pre>Access to a protected member _callback_values of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>151</td>
+                <td>8</td>
+                <td>warning</td>
+                <td><code>protected-access</code></td>
+                <td>W0212</td>
+                <td>TestAgentLogger.test_load_from_file</td>
+                <td><pre>Access to a protected member _log of a client class</pre></td>
+            </tr>
+            
+            <tr>
+                <td>173</td>
+                <td>0</td>
+                <td>convention</td>
+                <td><code>missing-final-newline</code></td>
+                <td>C0304</td>
+                <td></td>
+                <td><pre>Final newline missing</pre></td>
+            </tr>
+            
+        </table>
+        
         <h3>Module <code>tests.test_communicator</code> (<code>tests/test_communicator.py</code>)</h3>
         <table>
             <tr>
@@ -2750,6 +2914,26 @@ <h3>Module <code>tests.test_utils</code> (<code>tests/test_utils.py</code>)</h3>
     unittest.main()</pre></td>
             </tr>
             
+            <tr>
+                <td>1</td>
+                <td>0</td>
+                <td>refactor</td>
+                <td><code>duplicate-code</code></td>
+                <td>R0801</td>
+                <td></td>
+                <td><pre>Similar lines in 2 files
+==tests.test_agentlogger:[23:31]
+==tests.test_simulator:[60:68]
+        env_config = {&#34;rt&#34;: False, &#34;factor&#34;: 1}
+        agent_config = {&#34;id&#34;: &#34;TestAgent&#34;, &#34;modules&#34;: []}
+        env = Environment(config=env_config)
+        return Agent(env=env, config=agent_config)
+
+    def _get_module_cfg(self, **kwargs):
+        &#34;&#34;&#34;Dynamically build config to avoid duplicate code:&#34;&#34;&#34;
+        return {</pre></td>
+            </tr>
+            
             <tr>
                 <td>58</td>
                 <td>0</td>
@@ -2805,17 +2989,17 @@ <h3>Count per types</h3>
             
             <tr>
                 <td>refactor</td>
-                <td>82</td>
+                <td>83</td>
             </tr>
             
             <tr>
                 <td>warning</td>
-                <td>67</td>
+                <td>79</td>
             </tr>
             
             <tr>
                 <td>convention</td>
-                <td>95</td>
+                <td>98</td>
             </tr>
             
             <tr>
@@ -2865,7 +3049,7 @@ <h3>Count per messages</h3>
             
             <tr>
                 <td>missing-class-docstring</td>
-                <td>19</td>
+                <td>20</td>
             </tr>
             
             <tr>
@@ -2893,9 +3077,19 @@ <h3>Count per messages</h3>
                 <td>6</td>
             </tr>
             
+            <tr>
+                <td>missing-final-newline</td>
+                <td>1</td>
+            </tr>
+            
             <tr>
                 <td>missing-module-docstring</td>
-                <td>5</td>
+                <td>6</td>
+            </tr>
+            
+            <tr>
+                <td>protected-access</td>
+                <td>43</td>
             </tr>
             
             <tr>
@@ -2908,11 +3102,6 @@ <h3>Count per messages</h3>
                 <td>2</td>
             </tr>
             
-            <tr>
-                <td>protected-access</td>
-                <td>31</td>
-            </tr>
-            
             <tr>
                 <td>unused-variable</td>
                 <td>4</td>
@@ -2960,7 +3149,7 @@ <h3>Count per messages</h3>
             
             <tr>
                 <td>duplicate-code</td>
-                <td>2</td>
+                <td>3</td>
             </tr>
             
         </table>
@@ -2979,7 +3168,7 @@ <h3>Count per modules</h3>
             </tr>
             
             <tr>
-                <td>ci.run_examples</td>
+                <td>run_examples</td>
                 <td>8</td>
             </tr>
             
@@ -2988,6 +3177,11 @@ <h3>Count per modules</h3>
                 <td>19</td>
             </tr>
             
+            <tr>
+                <td>tests.test_agentlogger</td>
+                <td>15</td>
+            </tr>
+            
             <tr>
                 <td>tests.test_communicator</td>
                 <td>5</td>
@@ -3055,7 +3249,7 @@ <h3>Count per modules</h3>
             
             <tr>
                 <td>tests.test_utils</td>
-                <td>6</td>
+                <td>7</td>
             </tr>
             
         </table>
@@ -3083,6 +3277,11 @@ <h3>Count per path</h3>
                 <td>19</td>
             </tr>
             
+            <tr>
+                <td>tests/test_agentlogger.py</td>
+                <td>15</td>
+            </tr>
+            
             <tr>
                 <td>tests/test_communicator.py</td>
                 <td>5</td>
@@ -3150,7 +3349,7 @@ <h3>Count per path</h3>
             
             <tr>
                 <td>tests/test_utils.py</td>
-                <td>6</td>
+                <td>7</td>
             </tr>
             
         </table>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.json b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.json
index 84207f7..509e391 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.json
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.json
@@ -794,7 +794,7 @@
         },
         {
             "type": "warning",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 8,
             "column": 0,
@@ -805,7 +805,7 @@
         },
         {
             "type": "warning",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 10,
             "column": 0,
@@ -816,7 +816,7 @@
         },
         {
             "type": "warning",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 11,
             "column": 0,
@@ -827,7 +827,7 @@
         },
         {
             "type": "warning",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "TestExamples._run_example",
             "line": 45,
             "column": 12,
@@ -838,7 +838,7 @@
         },
         {
             "type": "convention",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "TestExamples.test_room_mas",
             "line": 61,
             "column": 8,
@@ -849,7 +849,7 @@
         },
         {
             "type": "convention",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 8,
             "column": 0,
@@ -860,7 +860,7 @@
         },
         {
             "type": "convention",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 10,
             "column": 0,
@@ -871,7 +871,7 @@
         },
         {
             "type": "convention",
-            "module": "ci.run_examples",
+            "module": "run_examples",
             "obj": "",
             "line": 11,
             "column": 0,
@@ -1089,6 +1089,171 @@
             "message": "Attribute '_still_running' defined outside __init__",
             "message-id": "W0201"
         },
+        {
+            "type": "convention",
+            "module": "tests.test_agentlogger",
+            "obj": "",
+            "line": 173,
+            "column": 0,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "missing-final-newline",
+            "message": "Final newline missing",
+            "message-id": "C0304"
+        },
+        {
+            "type": "convention",
+            "module": "tests.test_agentlogger",
+            "obj": "",
+            "line": 1,
+            "column": 0,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "missing-module-docstring",
+            "message": "Missing module docstring",
+            "message-id": "C0114"
+        },
+        {
+            "type": "convention",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger",
+            "line": 13,
+            "column": 0,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "missing-class-docstring",
+            "message": "Missing class docstring",
+            "message-id": "C0115"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_logging_values",
+            "line": 60,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_values of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_logging_values",
+            "line": 61,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_logging_full",
+            "line": 79,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_full of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_logging_full",
+            "line": 80,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_file_overwrite",
+            "line": 95,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_values of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_file_overwrite",
+            "line": 96,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_file_overwrite",
+            "line": 111,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_values of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_file_overwrite",
+            "line": 112,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_cleanup",
+            "line": 129,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_values of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_cleanup",
+            "line": 130,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_load_from_file",
+            "line": 150,
+            "column": 12,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _callback_values of a client class",
+            "message-id": "W0212"
+        },
+        {
+            "type": "warning",
+            "module": "tests.test_agentlogger",
+            "obj": "TestAgentLogger.test_load_from_file",
+            "line": 151,
+            "column": 8,
+            "path": "tests/test_agentlogger.py",
+            "symbol": "protected-access",
+            "message": "Access to a protected member _log of a client class",
+            "message-id": "W0212"
+        },
         {
             "type": "convention",
             "module": "tests.test_communicator",
@@ -2749,6 +2914,17 @@
             "symbol": "duplicate-code",
             "message": "Similar lines in 2 files\n==tests.test_agent:[203:211]\n==tests.test_environment:[61:69]\n        try:\n            os.remove(self.filepath)\n        except FileNotFoundError:\n            pass\n\n\nif __name__ == \"__main__\":\n    unittest.main()",
             "message-id": "R0801"
+        },
+        {
+            "type": "refactor",
+            "module": "tests.test_utils",
+            "obj": "",
+            "line": 1,
+            "column": 0,
+            "path": "tests/test_utils.py",
+            "symbol": "duplicate-code",
+            "message": "Similar lines in 2 files\n==tests.test_agentlogger:[23:31]\n==tests.test_simulator:[60:68]\n        env_config = {\"rt\": False, \"factor\": 1}\n        agent_config = {\"id\": \"TestAgent\", \"modules\": []}\n        env = Environment(config=env_config)\n        return Agent(env=env, config=agent_config)\n\n    def _get_module_cfg(self, **kwargs):\n        \"\"\"Dynamically build config to avoid duplicate code:\"\"\"\n        return {",
+            "message-id": "R0801"
         }
     ],
     "stats": {
@@ -2777,7 +2953,7 @@
                 "statement": 6,
                 "warning": 0
             },
-            "ci.run_examples": {
+            "run_examples": {
                 "convention": 4,
                 "error": 0,
                 "fatal": 0,
@@ -2804,6 +2980,15 @@
                 "statement": 132,
                 "warning": 7
             },
+            "tests.test_agentlogger": {
+                "convention": 3,
+                "error": 0,
+                "fatal": 0,
+                "info": 0,
+                "refactor": 0,
+                "statement": 83,
+                "warning": 12
+            },
             "tests.test_communicator": {
                 "convention": 5,
                 "error": 0,
@@ -2926,7 +3111,7 @@
                 "error": 0,
                 "fatal": 0,
                 "info": 0,
-                "refactor": 2,
+                "refactor": 3,
                 "statement": 59,
                 "warning": 1
             }
@@ -2936,16 +3121,17 @@
             "broad-exception-raised": 3,
             "import-outside-toplevel": 1,
             "ungrouped-imports": 4,
-            "missing-class-docstring": 19,
+            "missing-class-docstring": 20,
             "too-many-instance-attributes": 2,
             "unspecified-encoding": 8,
             "missing-function-docstring": 45,
             "invalid-name": 15,
             "attribute-defined-outside-init": 6,
-            "missing-module-docstring": 5,
+            "missing-final-newline": 1,
+            "missing-module-docstring": 6,
+            "protected-access": 43,
             "unnecessary-dunder-call": 3,
             "line-too-long": 2,
-            "protected-access": 31,
             "unused-variable": 4,
             "unused-argument": 2,
             "unused-import": 3,
@@ -2955,7 +3141,7 @@
             "abstract-class-instantiated": 1,
             "pointless-statement": 1,
             "no-else-return": 1,
-            "duplicate-code": 2
+            "duplicate-code": 3
         },
         "code_type_count": {
             "code": 0,
@@ -2966,14 +3152,15 @@
         },
         "dependencies": {
             "agentlib.core": [
-                "agentlib",
+                "tests.test_environment",
+                "tests.test_agentlogger",
+                "tests.test_data_broker",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_agent",
                 "tests.test_module",
                 "tests.test_simulator",
-                "tests.test_data_broker",
-                "tests.test_n_pingpong",
-                "tests.test_environment",
-                "tests.test_model"
+                "agentlib"
             ],
             "agentlib.models": [
                 "agentlib"
@@ -2982,70 +3169,76 @@
                 "agentlib"
             ],
             "agentlib.utils": [
-                "ci.run_examples",
-                "agentlib",
                 "tests.test_utils",
-                "tests.test_n_pingpong"
+                "run_examples",
+                "tests.test_n_pingpong",
+                "agentlib"
             ],
             "agentlib.core.datamodels": [
-                "agentlib",
                 "tests.test_datamodels",
+                "tests.test_agentlogger",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_module",
                 "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_model"
+                "agentlib"
             ],
             "agentlib.utils.multi_agent_system": [
-                "agentlib",
-                "tests.test_n_pingpong"
+                "tests.test_n_pingpong",
+                "agentlib"
             ],
             "pandas": [
-                "ci.run_examples",
                 "tests.test_datamodels",
-                "tests.test_data_source",
+                "tests.test_agentlogger",
                 "tests.test_simulator_dashboard",
+                "run_examples",
+                "tests.test_data_source",
                 "tests.test_simulator"
             ],
             "agentlib.utils.local_broadcast_broker": [
-                "ci.run_examples"
+                "run_examples"
             ],
             "pydantic": [
+                "tests.test_environment",
                 "tests.test_datamodels",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_agent",
                 "tests.test_module",
-                "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_environment",
-                "tests.test_model"
+                "tests.test_simulator"
             ],
             "agentlib.core.agent": [
                 "tests.test_agent",
                 "tests.test_utils"
             ],
             "agentlib.core.errors": [
-                "tests.test_module",
                 "tests.test_agent",
                 "tests.test_datamodels",
-                "tests.test_utils"
+                "tests.test_utils",
+                "tests.test_module"
             ],
-            "agentlib": [
+            "numpy": [
+                "tests.test_databroker_limits",
+                "tests.test_agentlogger",
+                "tests.test_data_broker",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_data_source",
+                "tests.test_simulator"
+            ],
+            "agentlib.modules.utils.agent_logger": [
+                "tests.test_agentlogger"
+            ],
+            "agentlib": [
                 "tests.test_communicator",
-                "tests.test_data_broker",
                 "tests.test_databroker_limits",
+                "tests.test_data_broker",
+                "tests.test_data_source",
                 "tests.test_utils"
             ],
             "agentlib.modules.communicator.local": [
                 "tests.test_communicator"
             ],
-            "numpy": [
-                "tests.test_data_source",
-                "tests.test_databroker_limits",
-                "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_data_broker",
-                "tests.test_model"
-            ],
             "agentlib.core.logging_": [
                 "tests.test_data_broker"
             ],
@@ -3089,26 +3282,26 @@
         },
         "node_count": {
             "function": 4,
-            "klass": 39,
-            "method": 182,
-            "module": 18
+            "klass": 40,
+            "method": 192,
+            "module": 19
         },
         "undocumented": {
             "function": 3,
-            "klass": 24,
+            "klass": 25,
             "method": 42,
-            "module": 5
+            "module": 6
         },
-        "convention": 95,
+        "convention": 98,
         "error": 6,
         "fatal": 0,
         "info": 0,
-        "refactor": 15,
-        "statement": 1296,
-        "warning": 62,
+        "refactor": 16,
+        "statement": 1379,
+        "warning": 74,
         "global_note": 0,
-        "nb_duplicated_lines": 12,
-        "percent_duplicated_lines": 0.5035669324381032
+        "nb_duplicated_lines": 17,
+        "percent_duplicated_lines": 0.6651017214397497
     },
     "previous": {
         "bad_names": {
@@ -3136,7 +3329,7 @@
                 "statement": 6,
                 "warning": 0
             },
-            "run_examples": {
+            "ci.run_examples": {
                 "convention": 4,
                 "error": 0,
                 "fatal": 0,
@@ -3163,6 +3356,15 @@
                 "statement": 132,
                 "warning": 7
             },
+            "tests.test_agentlogger": {
+                "convention": 3,
+                "error": 0,
+                "fatal": 0,
+                "info": 0,
+                "refactor": 0,
+                "statement": 83,
+                "warning": 12
+            },
             "tests.test_communicator": {
                 "convention": 5,
                 "error": 0,
@@ -3285,7 +3487,7 @@
                 "error": 0,
                 "fatal": 0,
                 "info": 0,
-                "refactor": 2,
+                "refactor": 3,
                 "statement": 59,
                 "warning": 1
             }
@@ -3295,16 +3497,17 @@
             "broad-exception-raised": 3,
             "import-outside-toplevel": 1,
             "ungrouped-imports": 4,
-            "missing-class-docstring": 19,
+            "missing-class-docstring": 20,
             "too-many-instance-attributes": 2,
             "unspecified-encoding": 8,
             "missing-function-docstring": 45,
             "invalid-name": 15,
             "attribute-defined-outside-init": 6,
-            "missing-module-docstring": 5,
+            "missing-final-newline": 1,
+            "missing-module-docstring": 6,
+            "protected-access": 43,
             "unnecessary-dunder-call": 3,
             "line-too-long": 2,
-            "protected-access": 31,
             "unused-variable": 4,
             "unused-argument": 2,
             "unused-import": 3,
@@ -3314,7 +3517,7 @@
             "abstract-class-instantiated": 1,
             "pointless-statement": 1,
             "no-else-return": 1,
-            "duplicate-code": 2
+            "duplicate-code": 3
         },
         "code_type_count": {
             "code": 0,
@@ -3325,14 +3528,15 @@
         },
         "dependencies": {
             "agentlib.core": [
-                "agentlib",
+                "tests.test_environment",
+                "tests.test_agentlogger",
+                "tests.test_data_broker",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_agent",
                 "tests.test_module",
                 "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_data_broker",
-                "tests.test_environment",
-                "tests.test_model"
+                "agentlib"
             ],
             "agentlib.models": [
                 "agentlib"
@@ -3341,70 +3545,76 @@
                 "agentlib"
             ],
             "agentlib.utils": [
-                "run_examples",
-                "agentlib",
                 "tests.test_utils",
-                "tests.test_n_pingpong"
+                "tests.test_n_pingpong",
+                "ci.run_examples",
+                "agentlib"
             ],
             "agentlib.core.datamodels": [
-                "agentlib",
                 "tests.test_datamodels",
+                "tests.test_agentlogger",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_module",
                 "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_model"
+                "agentlib"
             ],
             "agentlib.utils.multi_agent_system": [
-                "agentlib",
-                "tests.test_n_pingpong"
+                "tests.test_n_pingpong",
+                "agentlib"
             ],
             "pandas": [
-                "run_examples",
-                "tests.test_data_source",
                 "tests.test_datamodels",
+                "tests.test_agentlogger",
                 "tests.test_simulator_dashboard",
+                "ci.run_examples",
+                "tests.test_data_source",
                 "tests.test_simulator"
             ],
             "agentlib.utils.local_broadcast_broker": [
-                "run_examples"
+                "ci.run_examples"
             ],
             "pydantic": [
+                "tests.test_environment",
                 "tests.test_datamodels",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_agent",
                 "tests.test_module",
-                "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_environment",
-                "tests.test_model"
+                "tests.test_simulator"
             ],
             "agentlib.core.agent": [
                 "tests.test_agent",
                 "tests.test_utils"
             ],
             "agentlib.core.errors": [
-                "tests.test_module",
                 "tests.test_agent",
-                "tests.test_datamodels",
-                "tests.test_utils"
+                "tests.test_utils",
+                "tests.test_module",
+                "tests.test_datamodels"
             ],
-            "agentlib": [
+            "numpy": [
+                "tests.test_databroker_limits",
+                "tests.test_agentlogger",
+                "tests.test_data_broker",
+                "tests.test_model",
+                "tests.test_n_pingpong",
                 "tests.test_data_source",
+                "tests.test_simulator"
+            ],
+            "agentlib.modules.utils.agent_logger": [
+                "tests.test_agentlogger"
+            ],
+            "agentlib": [
                 "tests.test_communicator",
-                "tests.test_data_broker",
                 "tests.test_databroker_limits",
+                "tests.test_data_broker",
+                "tests.test_data_source",
                 "tests.test_utils"
             ],
             "agentlib.modules.communicator.local": [
                 "tests.test_communicator"
             ],
-            "numpy": [
-                "tests.test_model",
-                "tests.test_data_source",
-                "tests.test_simulator",
-                "tests.test_n_pingpong",
-                "tests.test_data_broker",
-                "tests.test_databroker_limits"
-            ],
             "agentlib.core.logging_": [
                 "tests.test_data_broker"
             ],
@@ -3448,25 +3658,25 @@
         },
         "node_count": {
             "function": 4,
-            "klass": 39,
-            "method": 182,
-            "module": 18
+            "klass": 40,
+            "method": 192,
+            "module": 19
         },
         "undocumented": {
             "function": 3,
-            "klass": 24,
+            "klass": 25,
             "method": 42,
-            "module": 5
+            "module": 6
         },
-        "convention": 95,
+        "convention": 98,
         "error": 6,
         "fatal": 0,
         "info": 0,
-        "refactor": 15,
-        "statement": 1296,
-        "warning": 62,
-        "global_note": 8.441358024691358,
-        "nb_duplicated_lines": 12,
-        "percent_duplicated_lines": 0.5035669324381032
+        "refactor": 16,
+        "statement": 1379,
+        "warning": 74,
+        "global_note": 8.41914430746918,
+        "nb_duplicated_lines": 17,
+        "percent_duplicated_lines": 0.6651017214397497
     }
 }
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.svg b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.svg
index e5c2b9c..1e4b91f 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.svg
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.svg
@@ -17,7 +17,7 @@
         <text x="22.0" y="14">pylint</text>
     </g>
     <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
-        <text x="63.0" y="15" fill="#010101" fill-opacity=".3">8.44</text>
-        <text x="62.0" y="14">8.44</text>
+        <text x="63.0" y="15" fill="#010101" fill-opacity=".3">8.42</text>
+        <text x="62.0" y="14">8.42</text>
     </g>
 </svg>
diff --git a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.txt b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.txt
index fa9bba0..3bdc141 100644
--- a/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.txt
+++ b/docs/43-agentlogger-does-not-create-directory-if-log-file-is-specified-in-a-subdirectory/pylint/pylint.txt
@@ -71,7 +71,7 @@ pylintrc:1:0: W0012: Unknown option value for '--disable', expected a valid pyli
 pylintrc:1:0: W0012: Unknown option value for '--disable', expected a valid pylint message and got 'old-octal-literal' (unknown-option-value)
 pylintrc:1:0: W0012: Unknown option value for '--disable', expected a valid pylint message and got 'non-ascii-bytes-literal' (unknown-option-value)
 pylintrc:1:0: W0012: Unknown option value for '--disable', expected a valid pylint message and got 'eq-without-hash' (unknown-option-value)
-************* Module run_examples
+************* Module ci.run_examples
 ci/run_examples.py:8:0: W0404: Reimport 'os' (imported line 5) (reimported)
 ci/run_examples.py:10:0: W0404: Reimport 'subprocess' (imported line 6) (reimported)
 ci/run_examples.py:11:0: W0404: Reimport 'unittest' (imported line 4) (reimported)
@@ -100,6 +100,22 @@ tests/test_agent.py:160:8: W0201: Attribute '_stop_test' defined outside __init_
 tests/test_agent.py:177:12: W0201: Attribute '_stop_test' defined outside __init__ (attribute-defined-outside-init)
 tests/test_agent.py:173:12: W0201: Attribute '_still_running' defined outside __init__ (attribute-defined-outside-init)
 tests/test_agent.py:186:12: W0201: Attribute '_still_running' defined outside __init__ (attribute-defined-outside-init)
+************* Module tests.test_agentlogger
+tests/test_agentlogger.py:173:0: C0304: Final newline missing (missing-final-newline)
+tests/test_agentlogger.py:1:0: C0114: Missing module docstring (missing-module-docstring)
+tests/test_agentlogger.py:13:0: C0115: Missing class docstring (missing-class-docstring)
+tests/test_agentlogger.py:60:8: W0212: Access to a protected member _callback_values of a client class (protected-access)
+tests/test_agentlogger.py:61:8: W0212: Access to a protected member _log of a client class (protected-access)
+tests/test_agentlogger.py:79:8: W0212: Access to a protected member _callback_full of a client class (protected-access)
+tests/test_agentlogger.py:80:8: W0212: Access to a protected member _log of a client class (protected-access)
+tests/test_agentlogger.py:95:8: W0212: Access to a protected member _callback_values of a client class (protected-access)
+tests/test_agentlogger.py:96:8: W0212: Access to a protected member _log of a client class (protected-access)
+tests/test_agentlogger.py:111:8: W0212: Access to a protected member _callback_values of a client class (protected-access)
+tests/test_agentlogger.py:112:8: W0212: Access to a protected member _log of a client class (protected-access)
+tests/test_agentlogger.py:129:8: W0212: Access to a protected member _callback_values of a client class (protected-access)
+tests/test_agentlogger.py:130:8: W0212: Access to a protected member _log of a client class (protected-access)
+tests/test_agentlogger.py:150:12: W0212: Access to a protected member _callback_values of a client class (protected-access)
+tests/test_agentlogger.py:151:8: W0212: Access to a protected member _log of a client class (protected-access)
 ************* Module tests.test_communicator
 tests/test_communicator.py:1:0: C0114: Missing module docstring (missing-module-docstring)
 tests/test_communicator.py:21:0: C0115: Missing class docstring (missing-class-docstring)
@@ -283,7 +299,18 @@ tests/test_utils.py:1:0: R0801: Similar lines in 2 files
 
 if __name__ == "__main__":
     unittest.main() (duplicate-code)
+tests/test_utils.py:1:0: R0801: Similar lines in 2 files
+==tests.test_agentlogger:[23:31]
+==tests.test_simulator:[60:68]
+        env_config = {"rt": False, "factor": 1}
+        agent_config = {"id": "TestAgent", "modules": []}
+        env = Environment(config=env_config)
+        return Agent(env=env, config=agent_config)
+
+    def _get_module_cfg(self, **kwargs):
+        """Dynamically build config to avoid duplicate code:"""
+        return { (duplicate-code)
 
 -----------------------------------
-Your code has been rated at 8.44/10
+Your code has been rated at 8.42/10