diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 232b04e..9a831e9 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -7,8 +7,6 @@ on: # Triggers the workflow on push or pull request events but only for the "operations" branch push: branches: ["operations"] - pull_request: - branches: ["operations"] # Allows you to run this workflow manually from the Actions tab workflow_dispatch: diff --git a/Program.qmd b/Program.qmd index b4a183b..d9eb9ff 100644 --- a/Program.qmd +++ b/Program.qmd @@ -22,7 +22,7 @@ schedule_day_1 <- "2024-06-10 11:00", "2024-06-10 14:00", "1B", "Talk", "title", "speakers", "speaker_titles", "companies", "2024-06-10 14:00", "2024-06-10 14:30", NA, "Break", NA, NA, NA, NA, "2024-06-10 14:30", "2024-06-10 15:15", "2", "Talk", "title", "speakers", "speaker_titles", "companies", - "2024-06-10 15:15", "2024-06-10 16:30", "3", "Workshop", "title", "speakers", "speaker_titles", "companies", + "2024-06-10 15:15", "2024-06-11 16:30", "3", "Workshop", "title", "speakers", "speaker_titles", "companies", ) |> dplyr::mutate(duration = time_length(ymd_hm(end_time) - ymd_hm(start_time), unit = "mins")) ``` diff --git a/docs/images/Gundula.jpeg b/docs/images/Gundula.jpeg new file mode 100644 index 0000000..00b7740 Binary files /dev/null and b/docs/images/Gundula.jpeg differ diff --git a/docs/images/Hicks.jpeg b/docs/images/Hicks.jpeg new file mode 100644 index 0000000..50c5225 Binary files /dev/null and b/docs/images/Hicks.jpeg differ diff --git a/docs/index.html b/docs/index.html index 91816e8..577dc59 100644 --- a/docs/index.html +++ b/docs/index.html @@ -127,8 +127,11 @@

On this page

@@ -156,10 +159,39 @@

R/Medicine 2024

AN R CONSORTIUM VIRTUAL CONFERENCE

-
-

WHY ATTEND

+
+

WHY ATTEND

The R/Medicine conference provides a forum for sharing R based tools and approaches used to analyze and gain insights from health data. Conference workshops provide a way to learn and develop your R skills. Midweek demos allow you to try out new R packages and tools, and our hackathon provides an opportunity to learn how to develop new R tools. The conference talks share new packages, and successes in analyzing health, laboratory, and clinical data with R and Shiny with a vigorous ongoing discussion with speakers (with pre-recorded talks) in the chat.

+
+

KeyNote Addresses

+
+
+
+

Stephanie Hicks

+

Statistical Challenges in Single-Cell and Spatial Transcriptomics

+

Thursday, June 13

+

+
+

Biography

+

Stephanie Hicks, PhD, MA and Associate Professor of Biomedical Engineering and Biostatistics at Johns Hopkins University, is an applied statistician working at the intersection of genomics and biomedical data science.

+
+
+
+ +
+
+

Gundula Bosch

+

Reproducibility in Medical Research

+

Friday, June 14

+

+
+

Biography

+

Gundula Bosch, PhD, MEd ’16, MS, is a scientist and educator leading global education reform through training programs in critical, broad, and interdisciplinary scientific thinking. She is the director of the R3 Center for Innovation and Science Education at the Johns Hopkins School of Public Health.

+
+
+
+

BROUGHT TO YOU BY


@@ -185,10 +217,11 @@

BROUGHT TO YOU BY

HELP EDIT THIS WEBSITE

-

This entire website was made using R.

+

This entire website was made using Quarto and R.

If you notice any problems or have any additions please submit a Pull Request to our public GitHub Repo

+
diff --git a/docs/search.json b/docs/search.json index 926f40a..2b80025 100644 --- a/docs/search.json +++ b/docs/search.json @@ -54,5 +54,19 @@ "title": "R/Medicine Schedule", "section": "", "text": "Code\n# Create a table for the day of events\ngt(schedule_day_1) |>\n tab_header(title = md(\"<br>Monday, June 10, 2024.<br><br>\")) |> # <- insert the date\n fmt_time(columns = c(start_time, end_time), time_style = \"h_m_p\") |>\n fmt_duration(\n columns = duration,\n input_units = \"minutes\",\n output_units = c(\"hours\", \"minutes\")\n ) |>\n cols_move(columns = duration, after = end_time) |>\n cols_merge(\n columns = c(t_number, t_type, t_title, t_speakers, t_speaker_titles, t_companies),\n pattern = md(\"<<{1} - >>{2}<br><< {3}<br>{4}<br>{5}, {6}>>\")\n ) |>\n cols_label(\n start_time ~ \"Start Time\",\n end_time ~ \"End Time\",\n duration ~ \"Duration\",\n t_number ~ \"\"\n ) |>\n cols_align(align = \"center\") |>\n cols_width(\n c(start_time, end_time, duration) ~ px(90),\n everything() ~ px(600)\n ) |>\n opt_align_table_header(align = \"left\") |>\n tab_options(\n heading.background.color = \"lightblue\",\n column_labels.background.color = \"gray85\"\n ) |>\n tab_style(\n locations = cells_body(rows = t_type == \"Break\"),\n style = cell_fill(color = \"bisque\")\n )\n\n\n\n\n\n\n \n \n \n \n \n \n \n \n Monday, June 10, 2024.\n \n \n \n Start Time\n End Time\n Duration\n \n \n \n \n 11:00 AM\n2:00 PM\n3h\n1A - Talk titlespeakersspeaker_titles, companies\n 11:00 AM\n2:00 PM\n3h\n1B - Talk titlespeakersspeaker_titles, companies\n 2:00 PM\n2:30 PM\n30m\nBreak\n 2:30 PM\n3:15 PM\n45m\n2 - Talk titlespeakersspeaker_titles, companies\n 3:15 PM\n4:30 PM\n1h 15m\n3 - Workshop titlespeakersspeaker_titles, companies\n \n \n \n\n\n\n\n\n\nCode\n# Create a table for the day of events\ngt(schedule_day_2) |>\n tab_header(title = md(\"<br>Tuesday, June 11, 2024.<br><br>\")) |> # <- insert the date\n fmt_time(columns = c(start_time, end_time), time_style = \"h_m_p\") |>\n fmt_duration(\n columns = duration,\n input_units = \"minutes\",\n output_units = c(\"hours\", \"minutes\")\n ) |>\n cols_move(columns = duration, after = end_time) |>\n cols_merge(\n columns = c(t_number, t_type, t_title, t_speakers, t_speaker_titles, t_companies),\n pattern = md(\"<<{1} - >>{2}<br><< {3}<br>{4}<br>{5}, {6}>>\")\n ) |>\n cols_label(\n start_time ~ \"Start Time\",\n end_time ~ \"End Time\",\n duration ~ \"Duration\",\n t_number ~ \"\"\n ) |>\n cols_align(align = \"center\") |>\n cols_width(\n c(start_time, end_time, duration) ~ px(90),\n everything() ~ px(600)\n ) |>\n opt_align_table_header(align = \"left\") |>\n tab_options(\n heading.background.color = \"lightblue\",\n column_labels.background.color = \"gray85\"\n ) |>\n tab_style(\n locations = cells_body(rows = t_type == \"Break\"),\n style = cell_fill(color = \"bisque\")\n )\n\n\n\n\n\n\n \n \n \n \n \n \n \n \n Tuesday, June 11, 2024.\n \n \n \n Start Time\n End Time\n Duration\n \n \n \n \n 11:00 AM\n2:00 PM\n3h\n1A - Talk titlespeakersspeaker_titles, companies\n 11:00 AM\n2:00 PM\n3h\n1B - Talk titlespeakersspeaker_titles, companies\n 2:00 PM\n2:30 PM\n30m\nBreak\n 2:30 PM\n3:15 PM\n45m\n2 - Talk titlespeakersspeaker_titles, companies\n 3:15 PM\n4:30 PM\n1h 15m\n3 - Workshop titlespeakersspeaker_titles, companies\n \n \n \n\n\n\n\n\n\nCode\n# Create a table for the day of events\ngt(schedule_day_3) |>\n tab_header(title = md(\"<br>Wednesday, June 12, 2024.<br><br>\")) |> # <- insert the date\n fmt_time(columns = c(start_time, end_time), time_style = \"h_m_p\") |>\n fmt_duration(\n columns = duration,\n input_units = \"minutes\",\n output_units = c(\"hours\", \"minutes\")\n ) |>\n cols_move(columns = duration, after = end_time) |>\n cols_merge(\n columns = c(t_number, t_type, t_title, t_speakers, t_speaker_titles, t_companies),\n pattern = md(\"<<{1} - >>{2}<br><< {3}<br>{4}<br>{5}, {6}>>\")\n ) |>\n cols_label(\n start_time ~ \"Start Time\",\n end_time ~ \"End Time\",\n duration ~ \"Duration\",\n t_number ~ \"\"\n ) |>\n cols_align(align = \"center\") |>\n cols_width(\n c(start_time, end_time, duration) ~ px(90),\n everything() ~ px(600)\n ) |>\n opt_align_table_header(align = \"left\") |>\n tab_options(\n heading.background.color = \"lightblue\",\n column_labels.background.color = \"gray85\"\n ) |>\n tab_style(\n locations = cells_body(rows = t_type == \"Break\"),\n style = cell_fill(color = \"bisque\")\n )\n\n\n\n\n\n\n \n \n \n \n \n \n \n \n Wednesday, June 12, 2024.\n \n \n \n Start Time\n End Time\n Duration\n \n \n \n \n 11:00 AM\n2:00 PM\n3h\n1A - Talk titlespeakersspeaker_titles, companies\n 11:00 AM\n2:00 PM\n3h\n1B - Talk titlespeakersspeaker_titles, companies\n 2:00 PM\n2:30 PM\n30m\nBreak\n 2:30 PM\n3:15 PM\n45m\n2 - Talk titlespeakersspeaker_titles, companies\n 3:15 PM\n4:30 PM\n1h 15m\n3 - Workshop titlespeakersspeaker_titles, companies\n \n \n \n\n\n\n\n\n\nCode\n# Create a table for the day of events\ngt(schedule_day_1) |>\n tab_header(title = md(\"<br>Thursday, June 13, 2024.<br><br>\")) |> # <- insert the date\n fmt_time(columns = c(start_time, end_time), time_style = \"h_m_p\") |>\n fmt_duration(\n columns = duration,\n input_units = \"minutes\",\n output_units = c(\"hours\", \"minutes\")\n ) |>\n cols_move(columns = duration, after = end_time) |>\n cols_merge(\n columns = c(t_number, t_type, t_title, t_speakers, t_speaker_titles, t_companies),\n pattern = md(\"<<{1} - >>{2}<br><< {3}<br>{4}<br>{5}, {6}>>\")\n ) |>\n cols_label(\n start_time ~ \"Start Time\",\n end_time ~ \"End Time\",\n duration ~ \"Duration\",\n t_number ~ \"\"\n ) |>\n cols_align(align = \"center\") |>\n cols_width(\n c(start_time, end_time, duration) ~ px(90),\n everything() ~ px(600)\n ) |>\n opt_align_table_header(align = \"left\") |>\n tab_options(\n heading.background.color = \"lightblue\",\n column_labels.background.color = \"gray85\"\n ) |>\n tab_style(\n locations = cells_body(rows = t_type == \"Break\"),\n style = cell_fill(color = \"bisque\")\n )\n\n\n\n\n\n\n \n \n \n \n \n \n \n \n Thursday, June 13, 2024.\n \n \n \n Start Time\n End Time\n Duration\n \n \n \n \n 11:00 AM\n2:00 PM\n3h\n1A - Talk titlespeakersspeaker_titles, companies\n 11:00 AM\n2:00 PM\n3h\n1B - Talk titlespeakersspeaker_titles, companies\n 2:00 PM\n2:30 PM\n30m\nBreak\n 2:30 PM\n3:15 PM\n45m\n2 - Talk titlespeakersspeaker_titles, companies\n 3:15 PM\n4:30 PM\n1h 15m\n3 - Workshop titlespeakersspeaker_titles, companies\n \n \n \n\n\n\n\n\n\nCode\n# Create a table for the day of events\ngt(schedule_day_5) |>\n tab_header(title = md(\"<br>Friday, June 14, 2024.<br><br>\")) |> # <- insert the date\n fmt_time(columns = c(start_time, end_time), time_style = \"h_m_p\") |>\n fmt_duration(\n columns = duration,\n input_units = \"minutes\",\n output_units = c(\"hours\", \"minutes\")\n ) |>\n cols_move(columns = duration, after = end_time) |>\n cols_merge(\n columns = c(t_number, t_type, t_title, t_speakers, t_speaker_titles, t_companies),\n pattern = md(\"<<{1} - >>{2}<br><< {3}<br>{4}<br>{5}, {6}>>\")\n ) |>\n cols_label(\n start_time ~ \"Start Time\",\n end_time ~ \"End Time\",\n duration ~ \"Duration\",\n t_number ~ \"\"\n ) |>\n cols_align(align = \"center\") |>\n cols_width(\n c(start_time, end_time, duration) ~ px(90),\n everything() ~ px(600)\n ) |>\n opt_align_table_header(align = \"left\") |>\n tab_options(\n heading.background.color = \"lightblue\",\n column_labels.background.color = \"gray85\"\n ) |>\n tab_style(\n locations = cells_body(rows = t_type == \"Break\"),\n style = cell_fill(color = \"bisque\")\n )\n\n\n\n\n\n\n \n \n \n \n \n \n \n \n Friday, June 14, 2024.\n \n \n \n Start Time\n End Time\n Duration\n \n \n \n \n 11:00 AM\n2:00 PM\n3h\n1A - Talk titlespeakersspeaker_titles, companies\n 11:00 AM\n2:00 PM\n3h\n1B - Talk titlespeakersspeaker_titles, companies\n 2:00 PM\n2:30 PM\n30m\nBreak\n 2:30 PM\n3:15 PM\n45m\n2 - Talk titlespeakersspeaker_titles, companies\n 3:15 PM\n4:30 PM\n1h 15m\n3 - Workshop titlespeakersspeaker_titles, companies" + }, + { + "objectID": "index.html#keynote-addresses", + "href": "index.html#keynote-addresses", + "title": "R/Medicine 2024", + "section": "KeyNote Addresses", + "text": "KeyNote Addresses\n\n\n\nStephanie Hicks\nStatistical Challenges in Single-Cell and Spatial Transcriptomics\nThursday, June 13\n\n\nBiography\nStephanie Hicks, PhD, MA and Associate Professor of Biomedical Engineering and Biostatistics at Johns Hopkins University, is an applied statistician working at the intersection of genomics and biomedical data science.\n\n\n\n\n\n\nGundula Bosch\nReproducibility in Medical Research \nFriday, June 14\n\n\nBiography\nGundula Bosch, PhD, MEd ’16, MS, is a scientist and educator leading global education reform through training programs in critical, broad, and interdisciplinary scientific thinking. She is the director of the R3 Center for Innovation and Science Education at the Johns Hopkins School of Public Health.\n\n\n\n\n\nBROUGHT TO YOU BY\n\n\n\n\n\n\n\nJoin our mailing list to hear all the latest about events, news and more\n\n\n\n\n\nHELP EDIT THIS WEBSITE\nThis entire website was made using Quarto and R.\nIf you notice any problems or have any additions please submit a Pull Request to our public GitHub Repo" + }, + { + "objectID": "index.html#why-attend", + "href": "index.html#why-attend", + "title": "R/Medicine 2024", + "section": "WHY ATTEND", + "text": "WHY ATTEND\nThe R/Medicine conference provides a forum for sharing R based tools and approaches used to analyze and gain insights from health data. Conference workshops provide a way to learn and develop your R skills. Midweek demos allow you to try out new R packages and tools, and our hackathon provides an opportunity to learn how to develop new R tools. The conference talks share new packages, and successes in analyzing health, laboratory, and clinical data with R and Shiny with a vigorous ongoing discussion with speakers (with pre-recorded talks) in the chat." } ] \ No newline at end of file diff --git a/images/Gundula.jpeg b/images/Gundula.jpeg new file mode 100644 index 0000000..00b7740 Binary files /dev/null and b/images/Gundula.jpeg differ diff --git a/images/Hicks.jpeg b/images/Hicks.jpeg new file mode 100644 index 0000000..50c5225 Binary files /dev/null and b/images/Hicks.jpeg differ diff --git a/index.qmd b/index.qmd index 6583c7d..5f49e08 100644 --- a/index.qmd +++ b/index.qmd @@ -8,10 +8,51 @@ title: "R/Medicine 2024" ## **AN R CONSORTIUM VIRTUAL CONFERENCE** ::: -### WHY ATTEND +## WHY ATTEND The R/Medicine conference provides a forum for sharing R based tools and approaches used to analyze and gain insights from health data. Conference workshops provide a way to learn and develop your R skills. Midweek demos allow you to try out new R packages and tools, and our hackathon provides an opportunity to learn how to develop new R tools. The conference talks share new packages, and successes in analyzing health, laboratory, and clinical data with R and Shiny with a vigorous ongoing discussion with speakers (with pre-recorded talks) in the chat. +## KeyNote Addresses + +::: columns +::: {.column width="45%"} +### Stephanie Hicks +*Statistical Challenges in Single-Cell and Spatial Transcriptomics* + +Thursday, June 13 + +![](images/Hicks.jpeg) + +#### Biography + +Stephanie Hicks, PhD, MA and Associate Professor of Biomedical Engineering and Biostatistics at Johns Hopkins University, is an applied statistician working at the intersection of genomics and biomedical data science. +::: + +::: {.column width="10%"} + +::: + + +::: {.column width="45%"} +### Gundula Bosch +*Reproducibility in Medical Research* +
+
+ +Friday, June 14 + +![](images/Gundula.jpeg) + +#### Biography + +Gundula Bosch, PhD, MEd '16, MS, is a scientist and educator leading global education reform through training programs in critical, broad, and interdisciplinary scientific thinking. She is the director of the R3 Center for Innovation and Science Education at the Johns Hopkins School of Public Health. + +::: +::: + + + + ### BROUGHT TO YOU BY
@@ -42,6 +83,6 @@ Join our mailing list to hear all the latest about events, news and more ``` ### HELP EDIT THIS WEBSITE -This entire website was made using R. +This entire website was made using Quarto and R. If you notice any problems or have any additions please submit a Pull Request to our public [GitHub Repo](https://github.com/RConsortium/RMedicine_website/)