diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 74eedb16..52488ed8 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -76,8 +76,7 @@ jobs: run: | ls -alht # What is in the "working directory"? git clone https://github.com/EHSRB-BSRSE-Bioinformatics/test-data - rm -r data # Remove existing directory before replacing w/ test data - rm -r config # Remove existing directory before replacing w/ test data + rm -r inputs # Remove existing directory before replacing w/ test data mv test-data/${{ matrix.seq_type}}/* ./ wget https://github.com/EHSRB-BSRSE-Bioinformatics/unify_temposeq_manifests/raw/main/output_manifests/Human_S1500_1.2_standardized.csv - name: Build snakemake environment