diff --git a/docker-compose.yml b/docker-compose.yml index 9ac13743..92abfe77 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -5,14 +5,12 @@ services: #restart: "unless-stopped" container_name: R-ODAF volumes: - - ./analysis:/home/R-ODAF/R-ODAF_Health_Canada/analysis - - ./metadata:/home/R-ODAF/R-ODAF_Health_Canada/data/metadata - - ./config:/home/R-ODAF/R-ODAF_Health_Canada/config - - ./raw-data:/home/R-ODAF/R-ODAF_Health_Canada/data/raw - - ./reference:/home/R-ODAF/R-ODAF_Health_Canada/reference - - ./wikipathways-20210810-gmt-Homo_sapiens.gmt:/home/R-ODAF/R-ODAF_Health_Canada/wikipathways-20210810-gmt-Homo_sapiens.gmt - - ./Human_S1500_1.2_standardized.csv:/home/R-ODAF/R-ODAF_Health_Canada/Human_S1500_1.2_standardized.csv - image: mattjmeier/r-odaf-hc:latest + - ./inputs:/home/R-ODAF/R-ODAF_Health_Canada/inputs + - ./output:/home/R-ODAF/R-ODAF_Health_Canada/output + #- ./reference:/home/R-ODAF/R-ODAF_Health_Canada/reference + #- ./wikipathways-20210810-gmt-Homo_sapiens.gmt:/home/R-ODAF/R-ODAF_Health_Canada/wikipathways-20210810-gmt-Homo_sapiens.gmt + #- ./Human_S1500_1.2_standardized.csv:/home/R-ODAF/R-ODAF_Health_Canada/Human_S1500_1.2_standardized.csv + image: r-odaf:latest # command: /bin/bash -l environment: - HOST_UID=10007