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import pyctb changes plotting behavior in spyder #7
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At this point spyder IDE is not supported. PyscesToolbox has been designed to work with Jupyter Notebooks making use of ipywidgets for interactive plots and d3networkx-psctb to render pathways. Refer to: The widgets have not been tested with spyder IDE and are not guaranteed to work. Of course, patches to implement this functionality are welcome 😃 |
I might try to look at your code over the holidays. I suspect it's either
some dedicated jupyter calls that are incompatible with the ide or the
plotting backend is incompatible with spyder. Currently I do the symca
calls first then restart the IDE to continue so it's not that disruptive.
I don't use the plotting facilities, just the symbolic derivation of
control equations.
…On Sun, Dec 17, 2023 at 1:23 AM Johann Rohwer ***@***.***> wrote:
At this point spyder IDE is not supported. PyscesToolbox has been designed
to work with Jupyter Notebooks making use of ipywidgets for interactive
plots and d3networkx-psctb to render pathways. Refer to:
https://pyscestoolbox.readthedocs.io/en/latest/installation.html
<https://urldefense.com/v3/__https://pyscestoolbox.readthedocs.io/en/latest/installation.html__;!!K-Hz7m0Vt54!j9mlifSB992YEtsGgj3vpccxHrtqhGN2Lj1RrIHUd-qaSHaGjJ2W-PpoRpG8xysRjh8HgkgD_ik1jnizKmnNzJZjo8ARsg$>
https://pyscestoolbox.readthedocs.io/en/latest/basic_usage.html
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The widgets have not been tested with spyder IDE and are not guaranteed to
work. Of course, patches to implement this functionality are welcome 😃
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If I import psctb into the spyder IDE (in windows), it changes the plotting behavior so that instead of the plot appearing in the spyder plot window it now appears as a floating window but with a much reduced size and no plot. Attempting to close this floating window crashes python. At this point the python kernel has to be restarted.
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