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Replace Bio.pairwise2 with Bio.Align.PairwiseAligner #36

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Ulthran opened this issue Oct 18, 2024 · 0 comments · Fixed by #37
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Replace Bio.pairwise2 with Bio.Align.PairwiseAligner #36

Ulthran opened this issue Oct 18, 2024 · 0 comments · Fixed by #37
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Ulthran commented Oct 18, 2024 

/home/ctbus/miniconda3/envs/q2-unassigner-dev/lib/python3.9/site-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
  warnings.warn(
@Ulthran Ulthran self-assigned this Oct 18, 2024
@Ulthran Ulthran linked a pull request Oct 18, 2024 that will close this issue
Replace pairwise2 with PairwiseAligner #37
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Replace pairwise2 with PairwiseAligner PennChopMicrobiomeProgram/unassigner
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