From d5c04ea3158b07e76e738527875633b581f1ad9c Mon Sep 17 00:00:00 2001 From: Guillaume Poirier-Morency Date: Mon, 24 Jun 2024 14:07:12 -0700 Subject: [PATCH] Update spec to 2.8.0 --- gemmapy/sdk/__init__.py | 7 +- gemmapy/sdk/api/default_api.py | 582 ++++++++++++++++-- gemmapy/sdk/api_client.py | 2 +- gemmapy/sdk/configuration.py | 6 +- gemmapy/sdk/models/__init__.py | 7 +- .../annotation_search_result_value_object.py | 2 +- gemmapy/sdk/models/annotation_value_object.py | 2 +- ...tion_with_usage_statistics_value_object.py | 2 +- gemmapy/sdk/models/api_info_value_object.py | 2 +- .../sdk/models/array_design_value_object.py | 2 +- ...sign_with_usage_statistics_value_object.py | 2 +- .../sdk/models/audit_event_value_object.py | 54 +- .../bibliographic_phenotypes_value_object.py | 2 +- .../bibliographic_reference_value_object.py | 2 +- gemmapy/sdk/models/bio_assay_value_object.py | 2 +- .../sdk/models/bio_material_value_object.py | 2 +- .../sdk/models/bio_sequence_value_object.py | 2 +- gemmapy/sdk/models/build_info_value_object.py | 2 +- ...gory_with_usage_statistics_value_object.py | 2 +- .../sdk/models/characteristic_value_object.py | 2 +- gemmapy/sdk/models/citation_value_object.py | 2 +- gemmapy/sdk/models/composite_sequence_arg.py | 2 +- .../models/composite_sequence_value_object.py | 2 +- .../models/contrast_result_value_object.py | 2 +- gemmapy/sdk/models/database_entry_arg.py | 2 +- .../sdk/models/database_entry_value_object.py | 2 +- gemmapy/sdk/models/dataset.py | 2 +- gemmapy/sdk/models/dataset1.py | 2 +- gemmapy/sdk/models/dataset10.py | 2 +- gemmapy/sdk/models/dataset11.py | 2 +- gemmapy/sdk/models/dataset2.py | 2 +- gemmapy/sdk/models/dataset3.py | 2 +- gemmapy/sdk/models/dataset4.py | 2 +- gemmapy/sdk/models/dataset5.py | 2 +- gemmapy/sdk/models/dataset6.py | 2 +- gemmapy/sdk/models/dataset7.py | 2 +- gemmapy/sdk/models/dataset8.py | 2 +- gemmapy/sdk/models/dataset9.py | 2 +- gemmapy/sdk/models/dataset_arg.py | 2 +- ...diff_ex_result_set_summary_value_object.py | 2 +- ...on_analysis_result_by_gene_value_object.py | 370 +++++++++++ ...ession_analysis_result_set_value_object.py | 2 +- ...expression_analysis_result_value_object.py | 2 +- ...ential_expression_analysis_value_object.py | 2 +- ...periment_expression_levels_value_object.py | 2 +- .../experimental_factor_value_object.py | 158 ++--- .../expression_experiment_set_value_object.py | 2 +- .../expression_experiment_value_object.py | 2 +- ...eriment_with_search_result_value_object.py | 2 +- .../models/external_database_value_object.py | 2 +- .../models/factor_value_basic_value_object.py | 2 +- .../sdk/models/factor_value_value_object.py | 2 +- gemmapy/sdk/models/filter_arg_array_design.py | 2 +- ...lter_arg_expression_analysis_result_set.py | 2 +- .../filter_arg_expression_experiment.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ...e_data_object_array_design_value_object.py | 2 +- ..._object_composite_sequence_value_object.py | 2 +- ...ession_analysis_result_set_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ..._response_data_object_gene_value_object.py | 2 +- gemmapy/sdk/models/geeq_value_object.py | 2 +- gemmapy/sdk/models/gene.py | 2 +- gemmapy/sdk/models/gene1.py | 2 +- gemmapy/sdk/models/gene2.py | 2 +- gemmapy/sdk/models/gene3.py | 2 +- gemmapy/sdk/models/gene4.py | 2 +- gemmapy/sdk/models/gene5.py | 2 +- gemmapy/sdk/models/gene6.py | 84 +++ gemmapy/sdk/models/gene7.py | 84 +++ gemmapy/sdk/models/gene_arg.py | 2 +- .../gene_element_expressions_value_object.py | 2 +- .../models/gene_ontology_term_value_object.py | 2 +- gemmapy/sdk/models/gene_set_value_object.py | 2 +- gemmapy/sdk/models/gene_value_object.py | 2 +- .../sdk/models/measurement_value_object.py | 2 +- ...esult_value_object_object_result_object.py | 2 +- .../sdk/models/ontology_term_value_object.py | 2 +- ..._object_composite_sequence_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- ..._response_data_object_gene_value_object.py | 2 +- ...ession_analysis_result_set_value_object.py | 2 +- .../models/physical_location_value_object.py | 2 +- gemmapy/sdk/models/platform.py | 2 +- gemmapy/sdk/models/platform1.py | 2 +- gemmapy/sdk/models/platform2.py | 2 +- gemmapy/sdk/models/platform3.py | 2 +- gemmapy/sdk/models/platform4.py | 2 +- gemmapy/sdk/models/platform5.py | 2 +- gemmapy/sdk/models/platform_arg.py | 2 +- gemmapy/sdk/models/probe.py | 2 +- gemmapy/sdk/models/quantitation_type.py | 2 +- gemmapy/sdk/models/quantitation_type_arg.py | 2 +- .../models/quantitation_type_value_object.py | 2 +- ...tion_with_usage_statistics_value_object.py | 2 +- ...sign_with_usage_statistics_value_object.py | 2 +- ...gory_with_usage_statistics_value_object.py | 2 +- ...on_analysis_result_by_gene_value_object.py | 318 ++++++++++ ...eriment_with_search_result_value_object.py | 2 +- ...axon_with_usage_statistics_value_object.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- gemmapy/sdk/models/query_arg.py | 2 +- ...ponse_data_object_api_info_value_object.py | 2 +- ...t_annotation_search_result_value_object.py | 2 +- ...a_object_list_array_design_value_object.py | 2 +- ...data_object_list_bio_assay_value_object.py | 2 +- ...ential_expression_analysis_value_object.py | 2 +- ...periment_expression_levels_value_object.py | 2 +- ...ct_list_gene_ontology_term_value_object.py | 2 +- ...onse_data_object_list_gene_value_object.py | 2 +- ...ect_list_physical_location_value_object.py | 2 +- ...nse_data_object_list_taxon_value_object.py | 2 +- .../sdk/models/response_data_object_long.py | 2 +- ...data_object_set_annotation_value_object.py | 2 +- ...ject_set_quantitation_type_value_object.py | 2 +- ...nse_data_object_simple_svd_value_object.py | 2 +- gemmapy/sdk/models/response_error_object.py | 2 +- gemmapy/sdk/models/search_result_type.py | 2 +- ...ject_expression_experiment_value_object.py | 2 +- .../search_result_value_object_object.py | 2 +- .../search_results_response_data_object.py | 2 +- .../models/search_settings_value_object.py | 2 +- gemmapy/sdk/models/simple_svd_value_object.py | 2 +- gemmapy/sdk/models/sort_arg_array_design.py | 2 +- ...sort_arg_expression_analysis_result_set.py | 2 +- .../models/sort_arg_expression_experiment.py | 2 +- gemmapy/sdk/models/sort_value_object.py | 2 +- gemmapy/sdk/models/statement_value_object.py | 2 +- gemmapy/sdk/models/taxa.py | 2 +- gemmapy/sdk/models/taxon.py | 2 +- gemmapy/sdk/models/taxon1.py | 2 +- gemmapy/sdk/models/taxon10.py | 84 +++ gemmapy/sdk/models/taxon2.py | 2 +- gemmapy/sdk/models/taxon3.py | 2 +- gemmapy/sdk/models/taxon4.py | 2 +- gemmapy/sdk/models/taxon5.py | 2 +- gemmapy/sdk/models/taxon6.py | 2 +- gemmapy/sdk/models/taxon7.py | 2 +- gemmapy/sdk/models/taxon8.py | 2 +- gemmapy/sdk/models/taxon9.py | 2 +- gemmapy/sdk/models/taxon_arg.py | 2 +- gemmapy/sdk/models/taxon_value_object.py | 2 +- ...axon_with_usage_statistics_value_object.py | 2 +- .../sdk/models/vector_element_value_object.py | 2 +- .../sdk/models/well_composed_error_body.py | 2 +- gemmapy/sdk/rest.py | 2 +- sdk-gen/generate-sdk.sh | 2 +- sdk-gen/openapi.yaml | 405 +++++++++++- 148 files changed, 2121 insertions(+), 310 deletions(-) create mode 100644 gemmapy/sdk/models/differential_expression_analysis_result_by_gene_value_object.py create mode 100644 gemmapy/sdk/models/gene6.py create mode 100644 gemmapy/sdk/models/gene7.py create mode 100644 gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object.py create mode 100644 gemmapy/sdk/models/taxon10.py diff --git a/gemmapy/sdk/__init__.py b/gemmapy/sdk/__init__.py index 8820528..49912ff 100644 --- a/gemmapy/sdk/__init__.py +++ b/gemmapy/sdk/__init__.py @@ -7,7 +7,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -55,6 +55,7 @@ from gemmapy.sdk.models.dataset9 import Dataset9 from gemmapy.sdk.models.dataset_arg import DatasetArg from gemmapy.sdk.models.diff_ex_result_set_summary_value_object import DiffExResultSetSummaryValueObject +from gemmapy.sdk.models.differential_expression_analysis_result_by_gene_value_object import DifferentialExpressionAnalysisResultByGeneValueObject from gemmapy.sdk.models.differential_expression_analysis_result_set_value_object import DifferentialExpressionAnalysisResultSetValueObject from gemmapy.sdk.models.differential_expression_analysis_result_value_object import DifferentialExpressionAnalysisResultValueObject from gemmapy.sdk.models.differential_expression_analysis_value_object import DifferentialExpressionAnalysisValueObject @@ -82,6 +83,8 @@ from gemmapy.sdk.models.gene3 import Gene3 from gemmapy.sdk.models.gene4 import Gene4 from gemmapy.sdk.models.gene5 import Gene5 +from gemmapy.sdk.models.gene6 import Gene6 +from gemmapy.sdk.models.gene7 import Gene7 from gemmapy.sdk.models.gene_arg import GeneArg from gemmapy.sdk.models.gene_element_expressions_value_object import GeneElementExpressionsValueObject from gemmapy.sdk.models.gene_ontology_term_value_object import GeneOntologyTermValueObject @@ -109,6 +112,7 @@ from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectCategoryWithUsageStatisticsValueObject +from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object import QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object import QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object import QueriedAndFilteredAndInferredResponseDataObjectTaxonWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object import QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject @@ -142,6 +146,7 @@ from gemmapy.sdk.models.taxa import Taxa from gemmapy.sdk.models.taxon import Taxon from gemmapy.sdk.models.taxon1 import Taxon1 +from gemmapy.sdk.models.taxon10 import Taxon10 from gemmapy.sdk.models.taxon2 import Taxon2 from gemmapy.sdk.models.taxon3 import Taxon3 from gemmapy.sdk.models.taxon4 import Taxon4 diff --git a/gemmapy/sdk/api/default_api.py b/gemmapy/sdk/api/default_api.py index 7e64c18..5a15e1b 100644 --- a/gemmapy/sdk/api/default_api.py +++ b/gemmapy/sdk/api/default_api.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -35,6 +35,236 @@ def __init__(self, api_client=None): api_client = ApiClient() self.api_client = api_client + def get_annotations_children(self, **kwargs): # noqa: E501 + """Retrieve the children of the given annotations # noqa: E501 + + Terms that are returned satisfies the [inverse of rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms) or [has_part](http://purl.obolibrary.org/obo/BFO_0000051) relations. When `direct` is set to false, this rule is applied recursively. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_annotations_children(async_req=True) + >>> result = thread.get() + + :param async_req bool + :param str uri: Term URI + :param bool direct: Only include direct parents. + :return: list[AnnotationSearchResultValueObject] + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + + + attempts = 0 + + while True: + try: + if kwargs.get('async_req'): + return self.get_annotations_children_with_http_info(**kwargs) # noqa: E501 + else: + (data) = self.get_annotations_children_with_http_info(**kwargs) # noqa: E501 + return data + except ApiException as err: + if err.status in [429,500] and attempts < 2: + attempts += 1 + time.sleep(3) + else: + raise err + + def get_annotations_children_with_http_info(self, **kwargs): # noqa: E501 + """Retrieve the children of the given annotations # noqa: E501 + + Terms that are returned satisfies the [inverse of rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms) or [has_part](http://purl.obolibrary.org/obo/BFO_0000051) relations. When `direct` is set to false, this rule is applied recursively. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_annotations_children_with_http_info(async_req=True) + >>> result = thread.get() + + :param async_req bool + :param str uri: Term URI + :param bool direct: Only include direct parents. + :return: list[AnnotationSearchResultValueObject] + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['uri', 'direct'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + all_params.append('_force_table') + + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_annotations_children" % key + ) + params[key] = val + del params['kwargs'] + + collection_formats = {} + + path_params = {} + + query_params = [] + if 'uri' in params: + query_params.append(('uri', params['uri'])) # noqa: E501 + if 'direct' in params: + query_params.append(('direct', params['direct'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + if not kwargs.get('_force_table'): + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + response_type = 'list[AnnotationSearchResultValueObject]' # noqa: E501 + else: + header_params['Accept'] = 'text/tab-separated-values; charset=UTF-8' + response_type = 'str' + + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/annotations/children', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type=response_type, + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_annotations_parents(self, **kwargs): # noqa: E501 + """Retrieve the parents of the given annotations # noqa: E501 + + Terms that are returned satisfies the [rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms) or [part_of](http://purl.obolibrary.org/obo/BFO_0000050) relations. When `direct` is set to false, this rule is applied recursively. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_annotations_parents(async_req=True) + >>> result = thread.get() + + :param async_req bool + :param str uri: Term URI + :param bool direct: Only include direct children. + :return: list[AnnotationSearchResultValueObject] + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + + + attempts = 0 + + while True: + try: + if kwargs.get('async_req'): + return self.get_annotations_parents_with_http_info(**kwargs) # noqa: E501 + else: + (data) = self.get_annotations_parents_with_http_info(**kwargs) # noqa: E501 + return data + except ApiException as err: + if err.status in [429,500] and attempts < 2: + attempts += 1 + time.sleep(3) + else: + raise err + + def get_annotations_parents_with_http_info(self, **kwargs): # noqa: E501 + """Retrieve the parents of the given annotations # noqa: E501 + + Terms that are returned satisfies the [rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms) or [part_of](http://purl.obolibrary.org/obo/BFO_0000050) relations. When `direct` is set to false, this rule is applied recursively. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_annotations_parents_with_http_info(async_req=True) + >>> result = thread.get() + + :param async_req bool + :param str uri: Term URI + :param bool direct: Only include direct children. + :return: list[AnnotationSearchResultValueObject] + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['uri', 'direct'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + all_params.append('_force_table') + + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_annotations_parents" % key + ) + params[key] = val + del params['kwargs'] + + collection_formats = {} + + path_params = {} + + query_params = [] + if 'uri' in params: + query_params.append(('uri', params['uri'])) # noqa: E501 + if 'direct' in params: + query_params.append(('direct', params['direct'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + if not kwargs.get('_force_table'): + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json']) # noqa: E501 + response_type = 'list[AnnotationSearchResultValueObject]' # noqa: E501 + else: + header_params['Accept'] = 'text/tab-separated-values; charset=UTF-8' + response_type = 'str' + + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/annotations/parents', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type=response_type, + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + def get_api_info(self, **kwargs): # noqa: E501 """Retrieve an object with basic API information # noqa: E501 @@ -744,12 +974,12 @@ def get_dataset_differential_expression_analyses_with_http_info(self, dataset, * _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) - def get_dataset_differential_expression_analyses_result_sets(self, dataset, **kwargs): # noqa: E501 + def get_dataset_differential_expression_analysis_result_sets(self, dataset, **kwargs): # noqa: E501 """Retrieve the result sets of all differential analyses of a dataset # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_dataset_differential_expression_analyses_result_sets(dataset, async_req=True) + >>> thread = api.get_dataset_differential_expression_analysis_result_sets(dataset, async_req=True) >>> result = thread.get() :param async_req bool @@ -766,9 +996,9 @@ def get_dataset_differential_expression_analyses_result_sets(self, dataset, **kw while True: try: if kwargs.get('async_req'): - return self.get_dataset_differential_expression_analyses_result_sets_with_http_info(dataset, **kwargs) # noqa: E501 + return self.get_dataset_differential_expression_analysis_result_sets_with_http_info(dataset, **kwargs) # noqa: E501 else: - (data) = self.get_dataset_differential_expression_analyses_result_sets_with_http_info(dataset, **kwargs) # noqa: E501 + (data) = self.get_dataset_differential_expression_analysis_result_sets_with_http_info(dataset, **kwargs) # noqa: E501 return data except ApiException as err: if err.status in [429,500] and attempts < 2: @@ -777,12 +1007,12 @@ def get_dataset_differential_expression_analyses_result_sets(self, dataset, **kw else: raise err - def get_dataset_differential_expression_analyses_result_sets_with_http_info(self, dataset, **kwargs): # noqa: E501 + def get_dataset_differential_expression_analysis_result_sets_with_http_info(self, dataset, **kwargs): # noqa: E501 """Retrieve the result sets of all differential analyses of a dataset # noqa: E501 This method makes a synchronous HTTP request by default. To make an asynchronous HTTP request, please pass async_req=True - >>> thread = api.get_dataset_differential_expression_analyses_result_sets_with_http_info(dataset, async_req=True) + >>> thread = api.get_dataset_differential_expression_analysis_result_sets_with_http_info(dataset, async_req=True) >>> result = thread.get() :param async_req bool @@ -805,14 +1035,14 @@ def get_dataset_differential_expression_analyses_result_sets_with_http_info(self if key not in all_params: raise TypeError( "Got an unexpected keyword argument '%s'" - " to method get_dataset_differential_expression_analyses_result_sets" % key + " to method get_dataset_differential_expression_analysis_result_sets" % key ) params[key] = val del params['kwargs'] # verify the required parameter 'dataset' is set if ('dataset' not in params or params['dataset'] is None): - raise ValueError("Missing the required parameter `dataset` when calling `get_dataset_differential_expression_analyses_result_sets`") # noqa: E501 + raise ValueError("Missing the required parameter `dataset` when calling `get_dataset_differential_expression_analysis_result_sets`") # noqa: E501 collection_formats = {} @@ -2564,6 +2794,284 @@ def get_datasets_categories_usage_statistics_with_http_info(self, **kwargs): # _request_timeout=params.get('_request_timeout'), collection_formats=collection_formats) + def get_datasets_differential_expression_analysis_results_for_gene(self, gene, **kwargs): # noqa: E501 + """Retrieve the differential expression results for a given gene # noqa: E501 + + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_datasets_differential_expression_analysis_results_for_gene(gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Gene gene: (required) + :param QueryArg query: + :param FilterArgExpressionExperiment filter: + :param int offset: + :param int limit: + :param float threshold: Maximum threshold on the corrected P-value to retain a result. The threshold is inclusive (i.e. 0.05 will match results with corrected P-values lower or equal to 0.05). + :return: QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + + + attempts = 0 + + while True: + try: + if kwargs.get('async_req'): + return self.get_datasets_differential_expression_analysis_results_for_gene_with_http_info(gene, **kwargs) # noqa: E501 + else: + (data) = self.get_datasets_differential_expression_analysis_results_for_gene_with_http_info(gene, **kwargs) # noqa: E501 + return data + except ApiException as err: + if err.status in [429,500] and attempts < 2: + attempts += 1 + time.sleep(3) + else: + raise err + + def get_datasets_differential_expression_analysis_results_for_gene_with_http_info(self, gene, **kwargs): # noqa: E501 + """Retrieve the differential expression results for a given gene # noqa: E501 + + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_datasets_differential_expression_analysis_results_for_gene_with_http_info(gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Gene gene: (required) + :param QueryArg query: + :param FilterArgExpressionExperiment filter: + :param int offset: + :param int limit: + :param float threshold: Maximum threshold on the corrected P-value to retain a result. The threshold is inclusive (i.e. 0.05 will match results with corrected P-values lower or equal to 0.05). + :return: QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['gene', 'query', 'filter', 'offset', 'limit', 'threshold'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + all_params.append('_force_table') + + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_datasets_differential_expression_analysis_results_for_gene" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'gene' is set + if ('gene' not in params or + params['gene'] is None): + raise ValueError("Missing the required parameter `gene` when calling `get_datasets_differential_expression_analysis_results_for_gene`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'gene' in params: + path_params['gene'] = params['gene'] # noqa: E501 + + query_params = [] + if 'query' in params: + query_params.append(('query', params['query'])) # noqa: E501 + if 'filter' in params: + query_params.append(('filter', params['filter'])) # noqa: E501 + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 + if 'threshold' in params: + query_params.append(('threshold', params['threshold'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + if not kwargs.get('_force_table'): + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json', 'text/tab-separated-values; charset=UTF-8']) # noqa: E501 + response_type = 'QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject' # noqa: E501 + else: + header_params['Accept'] = 'text/tab-separated-values; charset=UTF-8' + response_type = 'str' + + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/datasets/analyses/differential/results/genes/{gene}', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type=response_type, + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + + def get_datasets_differential_expression_analysis_results_for_gene_in_taxon(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the differential expression results for a given gene and taxa # noqa: E501 + + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_datasets_differential_expression_analysis_results_for_gene_in_taxon(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon2 taxon: (required) + :param Gene1 gene: (required) + :param QueryArg query: + :param FilterArgExpressionExperiment filter: + :param int offset: + :param int limit: + :param float threshold: Maximum threshold on the corrected P-value to retain a result. The threshold is inclusive (i.e. 0.05 will match results with corrected P-values lower or equal to 0.05). + :return: QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + kwargs['_return_http_data_only'] = True + + + attempts = 0 + + while True: + try: + if kwargs.get('async_req'): + return self.get_datasets_differential_expression_analysis_results_for_gene_in_taxon_with_http_info(taxon, gene, **kwargs) # noqa: E501 + else: + (data) = self.get_datasets_differential_expression_analysis_results_for_gene_in_taxon_with_http_info(taxon, gene, **kwargs) # noqa: E501 + return data + except ApiException as err: + if err.status in [429,500] and attempts < 2: + attempts += 1 + time.sleep(3) + else: + raise err + + def get_datasets_differential_expression_analysis_results_for_gene_in_taxon_with_http_info(self, taxon, gene, **kwargs): # noqa: E501 + """Retrieve the differential expression results for a given gene and taxa # noqa: E501 + + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. # noqa: E501 + This method makes a synchronous HTTP request by default. To make an + asynchronous HTTP request, please pass async_req=True + >>> thread = api.get_datasets_differential_expression_analysis_results_for_gene_in_taxon_with_http_info(taxon, gene, async_req=True) + >>> result = thread.get() + + :param async_req bool + :param Taxon2 taxon: (required) + :param Gene1 gene: (required) + :param QueryArg query: + :param FilterArgExpressionExperiment filter: + :param int offset: + :param int limit: + :param float threshold: Maximum threshold on the corrected P-value to retain a result. The threshold is inclusive (i.e. 0.05 will match results with corrected P-values lower or equal to 0.05). + :return: QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject + If the method is called asynchronously, + returns the request thread. + """ + + all_params = ['taxon', 'gene', 'query', 'filter', 'offset', 'limit', 'threshold'] # noqa: E501 + all_params.append('async_req') + all_params.append('_return_http_data_only') + all_params.append('_preload_content') + all_params.append('_request_timeout') + all_params.append('_force_table') + + + params = locals() + for key, val in six.iteritems(params['kwargs']): + if key not in all_params: + raise TypeError( + "Got an unexpected keyword argument '%s'" + " to method get_datasets_differential_expression_analysis_results_for_gene_in_taxon" % key + ) + params[key] = val + del params['kwargs'] + # verify the required parameter 'taxon' is set + if ('taxon' not in params or + params['taxon'] is None): + raise ValueError("Missing the required parameter `taxon` when calling `get_datasets_differential_expression_analysis_results_for_gene_in_taxon`") # noqa: E501 + # verify the required parameter 'gene' is set + if ('gene' not in params or + params['gene'] is None): + raise ValueError("Missing the required parameter `gene` when calling `get_datasets_differential_expression_analysis_results_for_gene_in_taxon`") # noqa: E501 + + collection_formats = {} + + path_params = {} + if 'taxon' in params: + path_params['taxon'] = params['taxon'] # noqa: E501 + if 'gene' in params: + path_params['gene'] = params['gene'] # noqa: E501 + + query_params = [] + if 'query' in params: + query_params.append(('query', params['query'])) # noqa: E501 + if 'filter' in params: + query_params.append(('filter', params['filter'])) # noqa: E501 + if 'offset' in params: + query_params.append(('offset', params['offset'])) # noqa: E501 + if 'limit' in params: + query_params.append(('limit', params['limit'])) # noqa: E501 + if 'threshold' in params: + query_params.append(('threshold', params['threshold'])) # noqa: E501 + + header_params = {} + + form_params = [] + local_var_files = {} + + body_params = None + # HTTP header `Accept` + if not kwargs.get('_force_table'): + header_params['Accept'] = self.api_client.select_header_accept( + ['application/json', 'text/tab-separated-values; charset=UTF-8']) # noqa: E501 + response_type = 'QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject' # noqa: E501 + else: + header_params['Accept'] = 'text/tab-separated-values; charset=UTF-8' + response_type = 'str' + + + # Authentication setting + auth_settings = ['basicAuth', 'cookieAuth'] # noqa: E501 + + return self.api_client.call_api( + '/datasets/analyses/differential/results/taxa/{taxon}/genes/{gene}', 'GET', + path_params, + query_params, + header_params, + body=body_params, + post_params=form_params, + files=local_var_files, + response_type=response_type, + auth_settings=auth_settings, + async_req=params.get('async_req'), + _return_http_data_only=params.get('_return_http_data_only'), + _preload_content=params.get('_preload_content', True), + _request_timeout=params.get('_request_timeout'), + collection_formats=collection_formats) + def get_datasets_platforms_usage_statistics(self, **kwargs): # noqa: E501 """Retrieve usage statistics of platforms among datasets matching the provided query and filter # noqa: E501 @@ -2805,7 +3313,7 @@ def get_gene_go_terms(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene gene: (required) + :param Gene2 gene: (required) :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. @@ -2838,7 +3346,7 @@ def get_gene_go_terms_with_http_info(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene gene: (required) + :param Gene2 gene: (required) :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. @@ -2918,7 +3426,7 @@ def get_gene_locations(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene1 gene: (required) + :param Gene3 gene: (required) :return: ResponseDataObjectListPhysicalLocationValueObject If the method is called asynchronously, returns the request thread. @@ -2951,7 +3459,7 @@ def get_gene_locations_with_http_info(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene1 gene: (required) + :param Gene3 gene: (required) :return: ResponseDataObjectListPhysicalLocationValueObject If the method is called asynchronously, returns the request thread. @@ -3031,7 +3539,7 @@ def get_gene_probes(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene2 gene: (required) + :param Gene4 gene: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectCompositeSequenceValueObject @@ -3066,7 +3574,7 @@ def get_gene_probes_with_http_info(self, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Gene2 gene: (required) + :param Gene4 gene: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectCompositeSequenceValueObject @@ -5052,7 +5560,7 @@ def get_taxon_datasets(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon3 taxon: (required) + :param Taxon4 taxon: (required) :param FilterArgExpressionExperiment filter: :param int offset: :param int limit: @@ -5089,7 +5597,7 @@ def get_taxon_datasets_with_http_info(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon3 taxon: (required) + :param Taxon4 taxon: (required) :param FilterArgExpressionExperiment filter: :param int offset: :param int limit: @@ -5181,8 +5689,8 @@ def get_taxon_gene_go_terms(self, taxon, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon4 taxon: (required) - :param Gene3 gene: (required) + :param Taxon5 taxon: (required) + :param Gene5 gene: (required) :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. @@ -5215,8 +5723,8 @@ def get_taxon_gene_go_terms_with_http_info(self, taxon, gene, **kwargs): # noqa >>> result = thread.get() :param async_req bool - :param Taxon4 taxon: (required) - :param Gene3 gene: (required) + :param Taxon5 taxon: (required) + :param Gene5 gene: (required) :return: ResponseDataObjectListGeneOntologyTermValueObject If the method is called asynchronously, returns the request thread. @@ -5302,8 +5810,8 @@ def get_taxon_gene_locations(self, taxon, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon5 taxon: (required) - :param Gene4 gene: (required) + :param Taxon6 taxon: (required) + :param Gene6 gene: (required) :return: ResponseDataObjectListPhysicalLocationValueObject If the method is called asynchronously, returns the request thread. @@ -5336,8 +5844,8 @@ def get_taxon_gene_locations_with_http_info(self, taxon, gene, **kwargs): # noq >>> result = thread.get() :param async_req bool - :param Taxon5 taxon: (required) - :param Gene4 gene: (required) + :param Taxon6 taxon: (required) + :param Gene6 gene: (required) :return: ResponseDataObjectListPhysicalLocationValueObject If the method is called asynchronously, returns the request thread. @@ -5423,8 +5931,8 @@ def get_taxon_gene_probes(self, taxon, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon6 taxon: (required) - :param Gene5 gene: (required) + :param Taxon7 taxon: (required) + :param Gene7 gene: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectCompositeSequenceValueObject @@ -5459,8 +5967,8 @@ def get_taxon_gene_probes_with_http_info(self, taxon, gene, **kwargs): # noqa: >>> result = thread.get() :param async_req bool - :param Taxon6 taxon: (required) - :param Gene5 gene: (required) + :param Taxon7 taxon: (required) + :param Gene7 gene: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectCompositeSequenceValueObject @@ -5552,7 +6060,7 @@ def get_taxon_genes(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon7 taxon: (required) + :param Taxon8 taxon: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectGeneValueObject @@ -5587,7 +6095,7 @@ def get_taxon_genes_with_http_info(self, taxon, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon7 taxon: (required) + :param Taxon8 taxon: (required) :param int offset: :param int limit: :return: PaginatedResponseDataObjectGeneValueObject @@ -5673,7 +6181,7 @@ def get_taxon_genes_by_ids(self, taxon, gene, **kwargs): # noqa: E501 >>> result = thread.get() :param async_req bool - :param Taxon8 taxon: (required) + :param Taxon9 taxon: (required) :param list[object] gene: (required) :return: ResponseDataObjectListGeneValueObject If the method is called asynchronously, @@ -5707,7 +6215,7 @@ def get_taxon_genes_by_ids_with_http_info(self, taxon, gene, **kwargs): # noqa: >>> result = thread.get() :param async_req bool - :param Taxon8 taxon: (required) + :param Taxon9 taxon: (required) :param list[object] gene: (required) :return: ResponseDataObjectListGeneValueObject If the method is called asynchronously, @@ -5795,7 +6303,7 @@ def get_taxon_genes_overlapping_chromosome(self, taxon, chromosome, start, size, >>> result = thread.get() :param async_req bool - :param Taxon9 taxon: (required) + :param Taxon10 taxon: (required) :param str chromosome: (required) :param int start: (required) :param int size: (required) @@ -5832,7 +6340,7 @@ def get_taxon_genes_overlapping_chromosome_with_http_info(self, taxon, chromosom >>> result = thread.get() :param async_req bool - :param Taxon9 taxon: (required) + :param Taxon10 taxon: (required) :param str chromosome: (required) :param int start: (required) :param int size: (required) @@ -5937,7 +6445,7 @@ def search(self, **kwargs): # noqa: E501 :param async_req bool :param QueryArg query: - :param Taxon2 taxon: + :param Taxon3 taxon: :param Platform5 platform: :param list[str] result_types: :param int limit: Maximum number of search results to return; capped at 2000 unless `resultObject` is excluded. @@ -5975,7 +6483,7 @@ def search_with_http_info(self, **kwargs): # noqa: E501 :param async_req bool :param QueryArg query: - :param Taxon2 taxon: + :param Taxon3 taxon: :param Platform5 platform: :param list[str] result_types: :param int limit: Maximum number of search results to return; capped at 2000 unless `resultObject` is excluded. diff --git a/gemmapy/sdk/api_client.py b/gemmapy/sdk/api_client.py index 343589e..08a9ac9 100644 --- a/gemmapy/sdk/api_client.py +++ b/gemmapy/sdk/api_client.py @@ -4,7 +4,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/configuration.py b/gemmapy/sdk/configuration.py index ed108e9..d791b70 100644 --- a/gemmapy/sdk/configuration.py +++ b/gemmapy/sdk/configuration.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -46,7 +46,7 @@ class Configuration(six.with_metaclass(TypeWithDefault, object)): def __init__(self): """Constructor""" # Default Base url - self.host = "https://gemma.msl.ubc.ca/rest/v2" + self.host = "https://staging-gemma.msl.ubc.ca/rest/v2" # Temp file folder for downloading files self.temp_folder_path = None @@ -256,6 +256,6 @@ def to_debug_report(self): return "Python SDK Debug Report:\n"\ "OS: {env}\n"\ "Python Version: {pyversion}\n"\ - "Version of the API: 2.7.6\n"\ + "Version of the API: 2.8.0\n"\ "SDK Package Version: 1.0.0".\ format(env=sys.platform, pyversion=sys.version) diff --git a/gemmapy/sdk/models/__init__.py b/gemmapy/sdk/models/__init__.py index eea8505..320c604 100644 --- a/gemmapy/sdk/models/__init__.py +++ b/gemmapy/sdk/models/__init__.py @@ -6,7 +6,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -49,6 +49,7 @@ from gemmapy.sdk.models.dataset9 import Dataset9 from gemmapy.sdk.models.dataset_arg import DatasetArg from gemmapy.sdk.models.diff_ex_result_set_summary_value_object import DiffExResultSetSummaryValueObject +from gemmapy.sdk.models.differential_expression_analysis_result_by_gene_value_object import DifferentialExpressionAnalysisResultByGeneValueObject from gemmapy.sdk.models.differential_expression_analysis_result_set_value_object import DifferentialExpressionAnalysisResultSetValueObject from gemmapy.sdk.models.differential_expression_analysis_result_value_object import DifferentialExpressionAnalysisResultValueObject from gemmapy.sdk.models.differential_expression_analysis_value_object import DifferentialExpressionAnalysisValueObject @@ -76,6 +77,8 @@ from gemmapy.sdk.models.gene3 import Gene3 from gemmapy.sdk.models.gene4 import Gene4 from gemmapy.sdk.models.gene5 import Gene5 +from gemmapy.sdk.models.gene6 import Gene6 +from gemmapy.sdk.models.gene7 import Gene7 from gemmapy.sdk.models.gene_arg import GeneArg from gemmapy.sdk.models.gene_element_expressions_value_object import GeneElementExpressionsValueObject from gemmapy.sdk.models.gene_ontology_term_value_object import GeneOntologyTermValueObject @@ -103,6 +106,7 @@ from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object import QueriedAndFilteredAndInferredAndLimitedResponseDataObjectCategoryWithUsageStatisticsValueObject +from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object import QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object import QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject from gemmapy.sdk.models.queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object import QueriedAndFilteredAndInferredResponseDataObjectTaxonWithUsageStatisticsValueObject from gemmapy.sdk.models.queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object import QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject @@ -136,6 +140,7 @@ from gemmapy.sdk.models.taxa import Taxa from gemmapy.sdk.models.taxon import Taxon from gemmapy.sdk.models.taxon1 import Taxon1 +from gemmapy.sdk.models.taxon10 import Taxon10 from gemmapy.sdk.models.taxon2 import Taxon2 from gemmapy.sdk.models.taxon3 import Taxon3 from gemmapy.sdk.models.taxon4 import Taxon4 diff --git a/gemmapy/sdk/models/annotation_search_result_value_object.py b/gemmapy/sdk/models/annotation_search_result_value_object.py index b5b0525..b5d84de 100644 --- a/gemmapy/sdk/models/annotation_search_result_value_object.py +++ b/gemmapy/sdk/models/annotation_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/annotation_value_object.py b/gemmapy/sdk/models/annotation_value_object.py index a66bb5e..3b3db2f 100644 --- a/gemmapy/sdk/models/annotation_value_object.py +++ b/gemmapy/sdk/models/annotation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py b/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py index 48a4c3a..b9c140b 100644 --- a/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/annotation_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/api_info_value_object.py b/gemmapy/sdk/models/api_info_value_object.py index 69fd180..a983235 100644 --- a/gemmapy/sdk/models/api_info_value_object.py +++ b/gemmapy/sdk/models/api_info_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/array_design_value_object.py b/gemmapy/sdk/models/array_design_value_object.py index a4c563c..c2acc1a 100644 --- a/gemmapy/sdk/models/array_design_value_object.py +++ b/gemmapy/sdk/models/array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py b/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py index 9adb5f6..be78894 100644 --- a/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/array_design_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/audit_event_value_object.py b/gemmapy/sdk/models/audit_event_value_object.py index b6951ac..680d859 100644 --- a/gemmapy/sdk/models/audit_event_value_object.py +++ b/gemmapy/sdk/models/audit_event_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -34,8 +34,8 @@ class AuditEventValueObject(object): 'action': 'str', 'note': 'str', 'detail': 'str', - 'action_name': 'str', - 'event_type_name': 'str' + 'event_type_name': 'str', + 'action_name': 'str' } attribute_map = { @@ -45,11 +45,11 @@ class AuditEventValueObject(object): 'action': 'action', 'note': 'note', 'detail': 'detail', - 'action_name': 'actionName', - 'event_type_name': 'eventTypeName' + 'event_type_name': 'eventTypeName', + 'action_name': 'actionName' } - def __init__(self, id=None, performer=None, _date=None, action=None, note=None, detail=None, action_name=None, event_type_name=None): # noqa: E501 + def __init__(self, id=None, performer=None, _date=None, action=None, note=None, detail=None, event_type_name=None, action_name=None): # noqa: E501 """AuditEventValueObject - a model defined in Swagger""" # noqa: E501 self._id = None self._performer = None @@ -57,8 +57,8 @@ def __init__(self, id=None, performer=None, _date=None, action=None, note=None, self._action = None self._note = None self._detail = None - self._action_name = None self._event_type_name = None + self._action_name = None self.discriminator = None if id is not None: self.id = id @@ -72,10 +72,10 @@ def __init__(self, id=None, performer=None, _date=None, action=None, note=None, self.note = note if detail is not None: self.detail = detail - if action_name is not None: - self.action_name = action_name if event_type_name is not None: self.event_type_name = event_type_name + if action_name is not None: + self.action_name = action_name @property def id(self): @@ -210,46 +210,46 @@ def detail(self, detail): self._detail = detail @property - def action_name(self): - """Gets the action_name of this AuditEventValueObject. # noqa: E501 + def event_type_name(self): + """Gets the event_type_name of this AuditEventValueObject. # noqa: E501 - :return: The action_name of this AuditEventValueObject. # noqa: E501 + :return: The event_type_name of this AuditEventValueObject. # noqa: E501 :rtype: str """ - return self._action_name + return self._event_type_name - @action_name.setter - def action_name(self, action_name): - """Sets the action_name of this AuditEventValueObject. + @event_type_name.setter + def event_type_name(self, event_type_name): + """Sets the event_type_name of this AuditEventValueObject. - :param action_name: The action_name of this AuditEventValueObject. # noqa: E501 + :param event_type_name: The event_type_name of this AuditEventValueObject. # noqa: E501 :type: str """ - self._action_name = action_name + self._event_type_name = event_type_name @property - def event_type_name(self): - """Gets the event_type_name of this AuditEventValueObject. # noqa: E501 + def action_name(self): + """Gets the action_name of this AuditEventValueObject. # noqa: E501 - :return: The event_type_name of this AuditEventValueObject. # noqa: E501 + :return: The action_name of this AuditEventValueObject. # noqa: E501 :rtype: str """ - return self._event_type_name + return self._action_name - @event_type_name.setter - def event_type_name(self, event_type_name): - """Sets the event_type_name of this AuditEventValueObject. + @action_name.setter + def action_name(self, action_name): + """Sets the action_name of this AuditEventValueObject. - :param event_type_name: The event_type_name of this AuditEventValueObject. # noqa: E501 + :param action_name: The action_name of this AuditEventValueObject. # noqa: E501 :type: str """ - self._event_type_name = event_type_name + self._action_name = action_name def to_dict(self): """Returns the model properties as a dict""" diff --git a/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py b/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py index b7e8791..0b125c7 100644 --- a/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py +++ b/gemmapy/sdk/models/bibliographic_phenotypes_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bibliographic_reference_value_object.py b/gemmapy/sdk/models/bibliographic_reference_value_object.py index f5aedd2..3feab61 100644 --- a/gemmapy/sdk/models/bibliographic_reference_value_object.py +++ b/gemmapy/sdk/models/bibliographic_reference_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_assay_value_object.py b/gemmapy/sdk/models/bio_assay_value_object.py index 91cd349..db347de 100644 --- a/gemmapy/sdk/models/bio_assay_value_object.py +++ b/gemmapy/sdk/models/bio_assay_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_material_value_object.py b/gemmapy/sdk/models/bio_material_value_object.py index 32b7c8e..0a21cc3 100644 --- a/gemmapy/sdk/models/bio_material_value_object.py +++ b/gemmapy/sdk/models/bio_material_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/bio_sequence_value_object.py b/gemmapy/sdk/models/bio_sequence_value_object.py index 5009a75..7023e20 100644 --- a/gemmapy/sdk/models/bio_sequence_value_object.py +++ b/gemmapy/sdk/models/bio_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/build_info_value_object.py b/gemmapy/sdk/models/build_info_value_object.py index 5184301..352af0c 100644 --- a/gemmapy/sdk/models/build_info_value_object.py +++ b/gemmapy/sdk/models/build_info_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/category_with_usage_statistics_value_object.py b/gemmapy/sdk/models/category_with_usage_statistics_value_object.py index f02c4d3..bb7ea54 100644 --- a/gemmapy/sdk/models/category_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/category_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/characteristic_value_object.py b/gemmapy/sdk/models/characteristic_value_object.py index 0b317d6..7bb500d 100644 --- a/gemmapy/sdk/models/characteristic_value_object.py +++ b/gemmapy/sdk/models/characteristic_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/citation_value_object.py b/gemmapy/sdk/models/citation_value_object.py index 634a435..84237f8 100644 --- a/gemmapy/sdk/models/citation_value_object.py +++ b/gemmapy/sdk/models/citation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/composite_sequence_arg.py b/gemmapy/sdk/models/composite_sequence_arg.py index c1cfd97..8424725 100644 --- a/gemmapy/sdk/models/composite_sequence_arg.py +++ b/gemmapy/sdk/models/composite_sequence_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/composite_sequence_value_object.py b/gemmapy/sdk/models/composite_sequence_value_object.py index af19175..473bc53 100644 --- a/gemmapy/sdk/models/composite_sequence_value_object.py +++ b/gemmapy/sdk/models/composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/contrast_result_value_object.py b/gemmapy/sdk/models/contrast_result_value_object.py index beac71a..54d8960 100644 --- a/gemmapy/sdk/models/contrast_result_value_object.py +++ b/gemmapy/sdk/models/contrast_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/database_entry_arg.py b/gemmapy/sdk/models/database_entry_arg.py index 6d90dc1..94bc350 100644 --- a/gemmapy/sdk/models/database_entry_arg.py +++ b/gemmapy/sdk/models/database_entry_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/database_entry_value_object.py b/gemmapy/sdk/models/database_entry_value_object.py index f4e670e..8758cb1 100644 --- a/gemmapy/sdk/models/database_entry_value_object.py +++ b/gemmapy/sdk/models/database_entry_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset.py b/gemmapy/sdk/models/dataset.py index 5af00f5..3ac68c9 100644 --- a/gemmapy/sdk/models/dataset.py +++ b/gemmapy/sdk/models/dataset.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset1.py b/gemmapy/sdk/models/dataset1.py index 69e98b9..a79ba54 100644 --- a/gemmapy/sdk/models/dataset1.py +++ b/gemmapy/sdk/models/dataset1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset10.py b/gemmapy/sdk/models/dataset10.py index dfe2c16..238f575 100644 --- a/gemmapy/sdk/models/dataset10.py +++ b/gemmapy/sdk/models/dataset10.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset11.py b/gemmapy/sdk/models/dataset11.py index 6c5ff08..02bb433 100644 --- a/gemmapy/sdk/models/dataset11.py +++ b/gemmapy/sdk/models/dataset11.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset2.py b/gemmapy/sdk/models/dataset2.py index be4fb2c..5d12ed9 100644 --- a/gemmapy/sdk/models/dataset2.py +++ b/gemmapy/sdk/models/dataset2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset3.py b/gemmapy/sdk/models/dataset3.py index 992f93d..d9cb2f7 100644 --- a/gemmapy/sdk/models/dataset3.py +++ b/gemmapy/sdk/models/dataset3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset4.py b/gemmapy/sdk/models/dataset4.py index 3366f4b..a8dc332 100644 --- a/gemmapy/sdk/models/dataset4.py +++ b/gemmapy/sdk/models/dataset4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset5.py b/gemmapy/sdk/models/dataset5.py index 64cf066..4b78e14 100644 --- a/gemmapy/sdk/models/dataset5.py +++ b/gemmapy/sdk/models/dataset5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset6.py b/gemmapy/sdk/models/dataset6.py index 2c8acc4..e03092b 100644 --- a/gemmapy/sdk/models/dataset6.py +++ b/gemmapy/sdk/models/dataset6.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset7.py b/gemmapy/sdk/models/dataset7.py index aef9ae5..05ef3aa 100644 --- a/gemmapy/sdk/models/dataset7.py +++ b/gemmapy/sdk/models/dataset7.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset8.py b/gemmapy/sdk/models/dataset8.py index 4a8fffc..f33673a 100644 --- a/gemmapy/sdk/models/dataset8.py +++ b/gemmapy/sdk/models/dataset8.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset9.py b/gemmapy/sdk/models/dataset9.py index dab43af..6d9d5de 100644 --- a/gemmapy/sdk/models/dataset9.py +++ b/gemmapy/sdk/models/dataset9.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/dataset_arg.py b/gemmapy/sdk/models/dataset_arg.py index 760b6d4..77d3c78 100644 --- a/gemmapy/sdk/models/dataset_arg.py +++ b/gemmapy/sdk/models/dataset_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py b/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py index 6968b10..b95d4da 100644 --- a/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py +++ b/gemmapy/sdk/models/diff_ex_result_set_summary_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/differential_expression_analysis_result_by_gene_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_result_by_gene_value_object.py new file mode 100644 index 0000000..d981122 --- /dev/null +++ b/gemmapy/sdk/models/differential_expression_analysis_result_by_gene_value_object.py @@ -0,0 +1,370 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.8.0 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class DifferentialExpressionAnalysisResultByGeneValueObject(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + 'id': 'int', + 'probe_id': 'int', + 'probe_name': 'str', + 'genes': 'list[GeneValueObject]', + 'corrected_pvalue': 'float', + 'rank': 'float', + 'contrasts': 'list[ContrastResultValueObject]', + 'source_experiment_id': 'int', + 'experiment_analyzed_id': 'int', + 'result_set_id': 'int', + 'pvalue': 'float' + } + + attribute_map = { + 'id': 'id', + 'probe_id': 'probeId', + 'probe_name': 'probeName', + 'genes': 'genes', + 'corrected_pvalue': 'correctedPvalue', + 'rank': 'rank', + 'contrasts': 'contrasts', + 'source_experiment_id': 'sourceExperimentId', + 'experiment_analyzed_id': 'experimentAnalyzedId', + 'result_set_id': 'resultSetId', + 'pvalue': 'pvalue' + } + + def __init__(self, id=None, probe_id=None, probe_name=None, genes=None, corrected_pvalue=None, rank=None, contrasts=None, source_experiment_id=None, experiment_analyzed_id=None, result_set_id=None, pvalue=None): # noqa: E501 + """DifferentialExpressionAnalysisResultByGeneValueObject - a model defined in Swagger""" # noqa: E501 + self._id = None + self._probe_id = None + self._probe_name = None + self._genes = None + self._corrected_pvalue = None + self._rank = None + self._contrasts = None + self._source_experiment_id = None + self._experiment_analyzed_id = None + self._result_set_id = None + self._pvalue = None + self.discriminator = None + if id is not None: + self.id = id + if probe_id is not None: + self.probe_id = probe_id + if probe_name is not None: + self.probe_name = probe_name + if genes is not None: + self.genes = genes + if corrected_pvalue is not None: + self.corrected_pvalue = corrected_pvalue + if rank is not None: + self.rank = rank + if contrasts is not None: + self.contrasts = contrasts + if source_experiment_id is not None: + self.source_experiment_id = source_experiment_id + if experiment_analyzed_id is not None: + self.experiment_analyzed_id = experiment_analyzed_id + if result_set_id is not None: + self.result_set_id = result_set_id + if pvalue is not None: + self.pvalue = pvalue + + @property + def id(self): + """Gets the id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._id + + @id.setter + def id(self, id): + """Sets the id of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param id: The id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._id = id + + @property + def probe_id(self): + """Gets the probe_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The probe_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._probe_id + + @probe_id.setter + def probe_id(self, probe_id): + """Sets the probe_id of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param probe_id: The probe_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._probe_id = probe_id + + @property + def probe_name(self): + """Gets the probe_name of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The probe_name of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: str + """ + return self._probe_name + + @probe_name.setter + def probe_name(self, probe_name): + """Sets the probe_name of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param probe_name: The probe_name of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: str + """ + + self._probe_name = probe_name + + @property + def genes(self): + """Gets the genes of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The genes of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: list[GeneValueObject] + """ + return self._genes + + @genes.setter + def genes(self, genes): + """Sets the genes of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param genes: The genes of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: list[GeneValueObject] + """ + + self._genes = genes + + @property + def corrected_pvalue(self): + """Gets the corrected_pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The corrected_pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: float + """ + return self._corrected_pvalue + + @corrected_pvalue.setter + def corrected_pvalue(self, corrected_pvalue): + """Sets the corrected_pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param corrected_pvalue: The corrected_pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: float + """ + + self._corrected_pvalue = corrected_pvalue + + @property + def rank(self): + """Gets the rank of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The rank of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: float + """ + return self._rank + + @rank.setter + def rank(self, rank): + """Sets the rank of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param rank: The rank of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: float + """ + + self._rank = rank + + @property + def contrasts(self): + """Gets the contrasts of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The contrasts of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: list[ContrastResultValueObject] + """ + return self._contrasts + + @contrasts.setter + def contrasts(self, contrasts): + """Sets the contrasts of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param contrasts: The contrasts of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: list[ContrastResultValueObject] + """ + + self._contrasts = contrasts + + @property + def source_experiment_id(self): + """Gets the source_experiment_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The source_experiment_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._source_experiment_id + + @source_experiment_id.setter + def source_experiment_id(self, source_experiment_id): + """Sets the source_experiment_id of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param source_experiment_id: The source_experiment_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._source_experiment_id = source_experiment_id + + @property + def experiment_analyzed_id(self): + """Gets the experiment_analyzed_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The experiment_analyzed_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._experiment_analyzed_id + + @experiment_analyzed_id.setter + def experiment_analyzed_id(self, experiment_analyzed_id): + """Sets the experiment_analyzed_id of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param experiment_analyzed_id: The experiment_analyzed_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._experiment_analyzed_id = experiment_analyzed_id + + @property + def result_set_id(self): + """Gets the result_set_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The result_set_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._result_set_id + + @result_set_id.setter + def result_set_id(self, result_set_id): + """Sets the result_set_id of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param result_set_id: The result_set_id of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._result_set_id = result_set_id + + @property + def pvalue(self): + """Gets the pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: float + """ + return self._pvalue + + @pvalue.setter + def pvalue(self, pvalue): + """Sets the pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. + + + :param pvalue: The pvalue of this DifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: float + """ + + self._pvalue = pvalue + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(DifferentialExpressionAnalysisResultByGeneValueObject, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, DifferentialExpressionAnalysisResultByGeneValueObject): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py index a207c65..0786a6a 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py index 6c117b8..9c74218 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/differential_expression_analysis_value_object.py b/gemmapy/sdk/models/differential_expression_analysis_value_object.py index 847007d..462c978 100644 --- a/gemmapy/sdk/models/differential_expression_analysis_value_object.py +++ b/gemmapy/sdk/models/differential_expression_analysis_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/experiment_expression_levels_value_object.py b/gemmapy/sdk/models/experiment_expression_levels_value_object.py index 8327728..4355544 100644 --- a/gemmapy/sdk/models/experiment_expression_levels_value_object.py +++ b/gemmapy/sdk/models/experiment_expression_levels_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/experimental_factor_value_object.py b/gemmapy/sdk/models/experimental_factor_value_object.py index af742a0..d93826b 100644 --- a/gemmapy/sdk/models/experimental_factor_value_object.py +++ b/gemmapy/sdk/models/experimental_factor_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ @@ -29,51 +29,51 @@ class ExperimentalFactorValueObject(object): """ swagger_types = { 'id': 'int', + 'name': 'str', + 'description': 'str', + 'type': 'str', 'category': 'str', 'category_uri': 'str', - 'description': 'str', 'factor_values': 'str', - 'name': 'str', - 'type': 'str', 'values': 'list[FactorValueValueObject]' } attribute_map = { 'id': 'id', + 'name': 'name', + 'description': 'description', + 'type': 'type', 'category': 'category', 'category_uri': 'categoryUri', - 'description': 'description', 'factor_values': 'factorValues', - 'name': 'name', - 'type': 'type', 'values': 'values' } - def __init__(self, id=None, category=None, category_uri=None, description=None, factor_values=None, name=None, type=None, values=None): # noqa: E501 + def __init__(self, id=None, name=None, description=None, type=None, category=None, category_uri=None, factor_values=None, values=None): # noqa: E501 """ExperimentalFactorValueObject - a model defined in Swagger""" # noqa: E501 self._id = None + self._name = None + self._description = None + self._type = None self._category = None self._category_uri = None - self._description = None self._factor_values = None - self._name = None - self._type = None self._values = None self.discriminator = None if id is not None: self.id = id + if name is not None: + self.name = name + if description is not None: + self.description = description + if type is not None: + self.type = type if category is not None: self.category = category if category_uri is not None: self.category_uri = category_uri - if description is not None: - self.description = description if factor_values is not None: self.factor_values = factor_values - if name is not None: - self.name = name - if type is not None: - self.type = type if values is not None: self.values = values @@ -99,138 +99,138 @@ def id(self, id): self._id = id @property - def category(self): - """Gets the category of this ExperimentalFactorValueObject. # noqa: E501 + def name(self): + """Gets the name of this ExperimentalFactorValueObject. # noqa: E501 - :return: The category of this ExperimentalFactorValueObject. # noqa: E501 + :return: The name of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._category + return self._name - @category.setter - def category(self, category): - """Sets the category of this ExperimentalFactorValueObject. + @name.setter + def name(self, name): + """Sets the name of this ExperimentalFactorValueObject. - :param category: The category of this ExperimentalFactorValueObject. # noqa: E501 + :param name: The name of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ - self._category = category + self._name = name @property - def category_uri(self): - """Gets the category_uri of this ExperimentalFactorValueObject. # noqa: E501 + def description(self): + """Gets the description of this ExperimentalFactorValueObject. # noqa: E501 - :return: The category_uri of this ExperimentalFactorValueObject. # noqa: E501 + :return: The description of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._category_uri + return self._description - @category_uri.setter - def category_uri(self, category_uri): - """Sets the category_uri of this ExperimentalFactorValueObject. + @description.setter + def description(self, description): + """Sets the description of this ExperimentalFactorValueObject. - :param category_uri: The category_uri of this ExperimentalFactorValueObject. # noqa: E501 + :param description: The description of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ - self._category_uri = category_uri + self._description = description @property - def description(self): - """Gets the description of this ExperimentalFactorValueObject. # noqa: E501 + def type(self): + """Gets the type of this ExperimentalFactorValueObject. # noqa: E501 - :return: The description of this ExperimentalFactorValueObject. # noqa: E501 + :return: The type of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._description + return self._type - @description.setter - def description(self, description): - """Sets the description of this ExperimentalFactorValueObject. + @type.setter + def type(self, type): + """Sets the type of this ExperimentalFactorValueObject. - :param description: The description of this ExperimentalFactorValueObject. # noqa: E501 + :param type: The type of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ + allowed_values = ["categorical", "continuous"] # noqa: E501 + if type not in allowed_values: + raise ValueError( + "Invalid value for `type` ({0}), must be one of {1}" # noqa: E501 + .format(type, allowed_values) + ) - self._description = description + self._type = type @property - def factor_values(self): - """Gets the factor_values of this ExperimentalFactorValueObject. # noqa: E501 + def category(self): + """Gets the category of this ExperimentalFactorValueObject. # noqa: E501 - This is deprecated, use `values` directly instead. # noqa: E501 - :return: The factor_values of this ExperimentalFactorValueObject. # noqa: E501 + :return: The category of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._factor_values + return self._category - @factor_values.setter - def factor_values(self, factor_values): - """Sets the factor_values of this ExperimentalFactorValueObject. + @category.setter + def category(self, category): + """Sets the category of this ExperimentalFactorValueObject. - This is deprecated, use `values` directly instead. # noqa: E501 - :param factor_values: The factor_values of this ExperimentalFactorValueObject. # noqa: E501 + :param category: The category of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ - self._factor_values = factor_values + self._category = category @property - def name(self): - """Gets the name of this ExperimentalFactorValueObject. # noqa: E501 + def category_uri(self): + """Gets the category_uri of this ExperimentalFactorValueObject. # noqa: E501 - :return: The name of this ExperimentalFactorValueObject. # noqa: E501 + :return: The category_uri of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._name + return self._category_uri - @name.setter - def name(self, name): - """Sets the name of this ExperimentalFactorValueObject. + @category_uri.setter + def category_uri(self, category_uri): + """Sets the category_uri of this ExperimentalFactorValueObject. - :param name: The name of this ExperimentalFactorValueObject. # noqa: E501 + :param category_uri: The category_uri of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ - self._name = name + self._category_uri = category_uri @property - def type(self): - """Gets the type of this ExperimentalFactorValueObject. # noqa: E501 + def factor_values(self): + """Gets the factor_values of this ExperimentalFactorValueObject. # noqa: E501 + This is deprecated, use `values` directly instead. # noqa: E501 - :return: The type of this ExperimentalFactorValueObject. # noqa: E501 + :return: The factor_values of this ExperimentalFactorValueObject. # noqa: E501 :rtype: str """ - return self._type + return self._factor_values - @type.setter - def type(self, type): - """Sets the type of this ExperimentalFactorValueObject. + @factor_values.setter + def factor_values(self, factor_values): + """Sets the factor_values of this ExperimentalFactorValueObject. + This is deprecated, use `values` directly instead. # noqa: E501 - :param type: The type of this ExperimentalFactorValueObject. # noqa: E501 + :param factor_values: The factor_values of this ExperimentalFactorValueObject. # noqa: E501 :type: str """ - allowed_values = ["categorical", "continuous"] # noqa: E501 - if type not in allowed_values: - raise ValueError( - "Invalid value for `type` ({0}), must be one of {1}" # noqa: E501 - .format(type, allowed_values) - ) - self._type = type + self._factor_values = factor_values @property def values(self): diff --git a/gemmapy/sdk/models/expression_experiment_set_value_object.py b/gemmapy/sdk/models/expression_experiment_set_value_object.py index 25596be..fdbea3d 100644 --- a/gemmapy/sdk/models/expression_experiment_set_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/expression_experiment_value_object.py b/gemmapy/sdk/models/expression_experiment_value_object.py index 305e34a..930737b 100644 --- a/gemmapy/sdk/models/expression_experiment_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py b/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py index 16215cc..702dcf5 100644 --- a/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py +++ b/gemmapy/sdk/models/expression_experiment_with_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/external_database_value_object.py b/gemmapy/sdk/models/external_database_value_object.py index 9144714..054645a 100644 --- a/gemmapy/sdk/models/external_database_value_object.py +++ b/gemmapy/sdk/models/external_database_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/factor_value_basic_value_object.py b/gemmapy/sdk/models/factor_value_basic_value_object.py index 88e7900..fd35706 100644 --- a/gemmapy/sdk/models/factor_value_basic_value_object.py +++ b/gemmapy/sdk/models/factor_value_basic_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/factor_value_value_object.py b/gemmapy/sdk/models/factor_value_value_object.py index 67a65f1..06510ac 100644 --- a/gemmapy/sdk/models/factor_value_value_object.py +++ b/gemmapy/sdk/models/factor_value_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_array_design.py b/gemmapy/sdk/models/filter_arg_array_design.py index 0764342..9b0a013 100644 --- a/gemmapy/sdk/models/filter_arg_array_design.py +++ b/gemmapy/sdk/models/filter_arg_array_design.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py b/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py index 4a588a4..cbb4fd3 100644 --- a/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py +++ b/gemmapy/sdk/models/filter_arg_expression_analysis_result_set.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filter_arg_expression_experiment.py b/gemmapy/sdk/models/filter_arg_expression_experiment.py index 7f71f46..fc1b65f 100644 --- a/gemmapy/sdk/models/filter_arg_expression_experiment.py +++ b/gemmapy/sdk/models/filter_arg_expression_experiment.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_inferred_and_paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/filtered_and_inferred_and_paginated_response_data_object_expression_experiment_value_object.py index 269dca7..96f0d48 100644 --- a/gemmapy/sdk/models/filtered_and_inferred_and_paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/filtered_and_inferred_and_paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py index 067c892..ee9730f 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py index 8f3197e..f3624cc 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py index e0d5723..c46c081 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py index bd6a026..ba8039b 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py index 61ea2e5..d548e03 100644 --- a/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py +++ b/gemmapy/sdk/models/filtered_and_paginated_response_data_object_gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/geeq_value_object.py b/gemmapy/sdk/models/geeq_value_object.py index 9eeea2f..66ed6d9 100644 --- a/gemmapy/sdk/models/geeq_value_object.py +++ b/gemmapy/sdk/models/geeq_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene.py b/gemmapy/sdk/models/gene.py index 32c4c4a..e514225 100644 --- a/gemmapy/sdk/models/gene.py +++ b/gemmapy/sdk/models/gene.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene1.py b/gemmapy/sdk/models/gene1.py index 3f6a8ac..4a4b99f 100644 --- a/gemmapy/sdk/models/gene1.py +++ b/gemmapy/sdk/models/gene1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene2.py b/gemmapy/sdk/models/gene2.py index a4879f4..1eb9f79 100644 --- a/gemmapy/sdk/models/gene2.py +++ b/gemmapy/sdk/models/gene2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene3.py b/gemmapy/sdk/models/gene3.py index 16c504f..a0171c7 100644 --- a/gemmapy/sdk/models/gene3.py +++ b/gemmapy/sdk/models/gene3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene4.py b/gemmapy/sdk/models/gene4.py index 332b5e6..3bce358 100644 --- a/gemmapy/sdk/models/gene4.py +++ b/gemmapy/sdk/models/gene4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene5.py b/gemmapy/sdk/models/gene5.py index e26eabf..96b83a3 100644 --- a/gemmapy/sdk/models/gene5.py +++ b/gemmapy/sdk/models/gene5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene6.py b/gemmapy/sdk/models/gene6.py new file mode 100644 index 0000000..992d188 --- /dev/null +++ b/gemmapy/sdk/models/gene6.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.8.0 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Gene6(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Gene6 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Gene6, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Gene6): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/gene7.py b/gemmapy/sdk/models/gene7.py new file mode 100644 index 0000000..2dee929 --- /dev/null +++ b/gemmapy/sdk/models/gene7.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.8.0 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Gene7(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Gene7 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Gene7, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Gene7): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/gene_arg.py b/gemmapy/sdk/models/gene_arg.py index 4995099..0e775e6 100644 --- a/gemmapy/sdk/models/gene_arg.py +++ b/gemmapy/sdk/models/gene_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_element_expressions_value_object.py b/gemmapy/sdk/models/gene_element_expressions_value_object.py index a1a0075..79524e1 100644 --- a/gemmapy/sdk/models/gene_element_expressions_value_object.py +++ b/gemmapy/sdk/models/gene_element_expressions_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_ontology_term_value_object.py b/gemmapy/sdk/models/gene_ontology_term_value_object.py index 2bc2287..be9bc84 100644 --- a/gemmapy/sdk/models/gene_ontology_term_value_object.py +++ b/gemmapy/sdk/models/gene_ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_set_value_object.py b/gemmapy/sdk/models/gene_set_value_object.py index 51a8e96..6de1c9b 100644 --- a/gemmapy/sdk/models/gene_set_value_object.py +++ b/gemmapy/sdk/models/gene_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/gene_value_object.py b/gemmapy/sdk/models/gene_value_object.py index 7ec13d1..dbb3eb9 100644 --- a/gemmapy/sdk/models/gene_value_object.py +++ b/gemmapy/sdk/models/gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/measurement_value_object.py b/gemmapy/sdk/models/measurement_value_object.py index b064ace..aecd5a1 100644 --- a/gemmapy/sdk/models/measurement_value_object.py +++ b/gemmapy/sdk/models/measurement_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py b/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py index 107431b..c75e087 100644 --- a/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py +++ b/gemmapy/sdk/models/one_of_search_result_value_object_object_result_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/ontology_term_value_object.py b/gemmapy/sdk/models/ontology_term_value_object.py index 86a08e2..5df1a6d 100644 --- a/gemmapy/sdk/models/ontology_term_value_object.py +++ b/gemmapy/sdk/models/ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py index ba1a9b1..e6ddb61 100644 --- a/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py +++ b/gemmapy/sdk/models/paginated_response_data_object_composite_sequence_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py index 8b98bae..cf657b8 100644 --- a/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py b/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py index f8f7720..5a942cd 100644 --- a/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py +++ b/gemmapy/sdk/models/paginated_response_data_object_gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/paginated_results_response_data_object_differential_expression_analysis_result_set_value_object.py b/gemmapy/sdk/models/paginated_results_response_data_object_differential_expression_analysis_result_set_value_object.py index bd49b6c..f51995b 100644 --- a/gemmapy/sdk/models/paginated_results_response_data_object_differential_expression_analysis_result_set_value_object.py +++ b/gemmapy/sdk/models/paginated_results_response_data_object_differential_expression_analysis_result_set_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/physical_location_value_object.py b/gemmapy/sdk/models/physical_location_value_object.py index d9f903a..832b070 100644 --- a/gemmapy/sdk/models/physical_location_value_object.py +++ b/gemmapy/sdk/models/physical_location_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform.py b/gemmapy/sdk/models/platform.py index a213545..2af0b2d 100644 --- a/gemmapy/sdk/models/platform.py +++ b/gemmapy/sdk/models/platform.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform1.py b/gemmapy/sdk/models/platform1.py index 7ec8723..7dffe73 100644 --- a/gemmapy/sdk/models/platform1.py +++ b/gemmapy/sdk/models/platform1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform2.py b/gemmapy/sdk/models/platform2.py index edb7502..2d981bf 100644 --- a/gemmapy/sdk/models/platform2.py +++ b/gemmapy/sdk/models/platform2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform3.py b/gemmapy/sdk/models/platform3.py index b5583f8..a52abf3 100644 --- a/gemmapy/sdk/models/platform3.py +++ b/gemmapy/sdk/models/platform3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform4.py b/gemmapy/sdk/models/platform4.py index c5ab1bb..041667b 100644 --- a/gemmapy/sdk/models/platform4.py +++ b/gemmapy/sdk/models/platform4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform5.py b/gemmapy/sdk/models/platform5.py index ce7f402..5a76797 100644 --- a/gemmapy/sdk/models/platform5.py +++ b/gemmapy/sdk/models/platform5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/platform_arg.py b/gemmapy/sdk/models/platform_arg.py index e5f8671..4a208e3 100644 --- a/gemmapy/sdk/models/platform_arg.py +++ b/gemmapy/sdk/models/platform_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/probe.py b/gemmapy/sdk/models/probe.py index 196612a..787503e 100644 --- a/gemmapy/sdk/models/probe.py +++ b/gemmapy/sdk/models/probe.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type.py b/gemmapy/sdk/models/quantitation_type.py index e2658e4..e5d11a1 100644 --- a/gemmapy/sdk/models/quantitation_type.py +++ b/gemmapy/sdk/models/quantitation_type.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type_arg.py b/gemmapy/sdk/models/quantitation_type_arg.py index 937b943..0fc72e1 100644 --- a/gemmapy/sdk/models/quantitation_type_arg.py +++ b/gemmapy/sdk/models/quantitation_type_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/quantitation_type_value_object.py b/gemmapy/sdk/models/quantitation_type_value_object.py index 12eac95..5a14e34 100644 --- a/gemmapy/sdk/models/quantitation_type_value_object.py +++ b/gemmapy/sdk/models/quantitation_type_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object.py index 4b451e8..7ab44b7 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_annotation_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object.py index 3940073..c7d855d 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_array_design_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object.py index e1f8a79..5bd05da 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_limited_response_data_object_category_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object.py new file mode 100644 index 0000000..447dbe6 --- /dev/null +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_differential_expression_analysis_result_by_gene_value_object.py @@ -0,0 +1,318 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.8.0 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + 'data': 'list[DifferentialExpressionAnalysisResultByGeneValueObject]', + 'group_by': 'list[str]', + 'sort': 'SortValueObject', + 'offset': 'int', + 'limit': 'int', + 'total_elements': 'int', + 'filter': 'str', + 'query': 'str', + 'inferred_terms': 'list[CharacteristicValueObject]' + } + + attribute_map = { + 'data': 'data', + 'group_by': 'groupBy', + 'sort': 'sort', + 'offset': 'offset', + 'limit': 'limit', + 'total_elements': 'totalElements', + 'filter': 'filter', + 'query': 'query', + 'inferred_terms': 'inferredTerms' + } + + def __init__(self, data=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None, filter=None, query=None, inferred_terms=None): # noqa: E501 + """QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject - a model defined in Swagger""" # noqa: E501 + self._data = None + self._group_by = None + self._sort = None + self._offset = None + self._limit = None + self._total_elements = None + self._filter = None + self._query = None + self._inferred_terms = None + self.discriminator = None + if data is not None: + self.data = data + if group_by is not None: + self.group_by = group_by + if sort is not None: + self.sort = sort + if offset is not None: + self.offset = offset + if limit is not None: + self.limit = limit + if total_elements is not None: + self.total_elements = total_elements + if filter is not None: + self.filter = filter + if query is not None: + self.query = query + if inferred_terms is not None: + self.inferred_terms = inferred_terms + + @property + def data(self): + """Gets the data of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The data of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: list[DifferentialExpressionAnalysisResultByGeneValueObject] + """ + return self._data + + @data.setter + def data(self, data): + """Sets the data of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param data: The data of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: list[DifferentialExpressionAnalysisResultByGeneValueObject] + """ + + self._data = data + + @property + def group_by(self): + """Gets the group_by of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The group_by of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: list[str] + """ + return self._group_by + + @group_by.setter + def group_by(self, group_by): + """Sets the group_by of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param group_by: The group_by of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: list[str] + """ + + self._group_by = group_by + + @property + def sort(self): + """Gets the sort of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The sort of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: SortValueObject + """ + return self._sort + + @sort.setter + def sort(self, sort): + """Sets the sort of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param sort: The sort of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: SortValueObject + """ + + self._sort = sort + + @property + def offset(self): + """Gets the offset of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The offset of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._offset + + @offset.setter + def offset(self, offset): + """Sets the offset of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param offset: The offset of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._offset = offset + + @property + def limit(self): + """Gets the limit of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The limit of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._limit + + @limit.setter + def limit(self, limit): + """Sets the limit of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param limit: The limit of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._limit = limit + + @property + def total_elements(self): + """Gets the total_elements of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The total_elements of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: int + """ + return self._total_elements + + @total_elements.setter + def total_elements(self, total_elements): + """Sets the total_elements of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param total_elements: The total_elements of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: int + """ + + self._total_elements = total_elements + + @property + def filter(self): + """Gets the filter of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The filter of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: str + """ + return self._filter + + @filter.setter + def filter(self, filter): + """Sets the filter of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param filter: The filter of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: str + """ + + self._filter = filter + + @property + def query(self): + """Gets the query of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The query of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: str + """ + return self._query + + @query.setter + def query(self, query): + """Sets the query of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param query: The query of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: str + """ + + self._query = query + + @property + def inferred_terms(self): + """Gets the inferred_terms of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + + + :return: The inferred_terms of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :rtype: list[CharacteristicValueObject] + """ + return self._inferred_terms + + @inferred_terms.setter + def inferred_terms(self, inferred_terms): + """Sets the inferred_terms of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. + + + :param inferred_terms: The inferred_terms of this QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject. # noqa: E501 + :type: list[CharacteristicValueObject] + """ + + self._inferred_terms = inferred_terms + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py index a323f4e..20b5a0c 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_and_paginated_response_data_object_expression_experiment_with_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object.py index 55c18ac..843ce8a 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_inferred_response_data_object_taxon_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py index 353bcf8..57d726e 100644 --- a/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/queried_and_filtered_and_paginated_response_data_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/query_arg.py b/gemmapy/sdk/models/query_arg.py index acf8ef7..bfea963 100644 --- a/gemmapy/sdk/models/query_arg.py +++ b/gemmapy/sdk/models/query_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_api_info_value_object.py b/gemmapy/sdk/models/response_data_object_api_info_value_object.py index d9e7baa..049f82f 100644 --- a/gemmapy/sdk/models/response_data_object_api_info_value_object.py +++ b/gemmapy/sdk/models/response_data_object_api_info_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py b/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py index ad73f55..3bbcfd3 100644 --- a/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_annotation_search_result_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py b/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py index 92b75b0..2e74cff 100644 --- a/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_array_design_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py b/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py index 342c984..8535fb7 100644 --- a/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_bio_assay_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py b/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py index ff9fbce..0ba0b16 100644 --- a/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_differential_expression_analysis_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py b/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py index 7a9d58b..34f5d04 100644 --- a/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_experiment_expression_levels_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py b/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py index 9d537a2..6b211b7 100644 --- a/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_gene_ontology_term_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_gene_value_object.py b/gemmapy/sdk/models/response_data_object_list_gene_value_object.py index 4ea7e54..55063e7 100644 --- a/gemmapy/sdk/models/response_data_object_list_gene_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_gene_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py b/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py index 185027c..7f00944 100644 --- a/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_physical_location_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py b/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py index 03c4ede..d8d2bea 100644 --- a/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py +++ b/gemmapy/sdk/models/response_data_object_list_taxon_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_long.py b/gemmapy/sdk/models/response_data_object_long.py index 7bd4272..bcddda5 100644 --- a/gemmapy/sdk/models/response_data_object_long.py +++ b/gemmapy/sdk/models/response_data_object_long.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py b/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py index f0ed558..b107154 100644 --- a/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py +++ b/gemmapy/sdk/models/response_data_object_set_annotation_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py b/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py index b683815..4a256c7 100644 --- a/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py +++ b/gemmapy/sdk/models/response_data_object_set_quantitation_type_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py b/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py index 76b1f07..b9b3b4c 100644 --- a/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py +++ b/gemmapy/sdk/models/response_data_object_simple_svd_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/response_error_object.py b/gemmapy/sdk/models/response_error_object.py index 7c3e3b0..228b8b7 100644 --- a/gemmapy/sdk/models/response_error_object.py +++ b/gemmapy/sdk/models/response_error_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_type.py b/gemmapy/sdk/models/search_result_type.py index 3b772e1..d16eb28 100644 --- a/gemmapy/sdk/models/search_result_type.py +++ b/gemmapy/sdk/models/search_result_type.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py b/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py index 50a6de1..de44d98 100644 --- a/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py +++ b/gemmapy/sdk/models/search_result_value_object_expression_experiment_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_result_value_object_object.py b/gemmapy/sdk/models/search_result_value_object_object.py index d4a7f11..212c731 100644 --- a/gemmapy/sdk/models/search_result_value_object_object.py +++ b/gemmapy/sdk/models/search_result_value_object_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_results_response_data_object.py b/gemmapy/sdk/models/search_results_response_data_object.py index adcd968..754d841 100644 --- a/gemmapy/sdk/models/search_results_response_data_object.py +++ b/gemmapy/sdk/models/search_results_response_data_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/search_settings_value_object.py b/gemmapy/sdk/models/search_settings_value_object.py index e81f758..91116c1 100644 --- a/gemmapy/sdk/models/search_settings_value_object.py +++ b/gemmapy/sdk/models/search_settings_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/simple_svd_value_object.py b/gemmapy/sdk/models/simple_svd_value_object.py index 6f77c82..51d13f6 100644 --- a/gemmapy/sdk/models/simple_svd_value_object.py +++ b/gemmapy/sdk/models/simple_svd_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_array_design.py b/gemmapy/sdk/models/sort_arg_array_design.py index ed1ad14..bd9915d 100644 --- a/gemmapy/sdk/models/sort_arg_array_design.py +++ b/gemmapy/sdk/models/sort_arg_array_design.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py b/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py index 2271377..cd93b71 100644 --- a/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py +++ b/gemmapy/sdk/models/sort_arg_expression_analysis_result_set.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_arg_expression_experiment.py b/gemmapy/sdk/models/sort_arg_expression_experiment.py index 5e3c173..af5009c 100644 --- a/gemmapy/sdk/models/sort_arg_expression_experiment.py +++ b/gemmapy/sdk/models/sort_arg_expression_experiment.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/sort_value_object.py b/gemmapy/sdk/models/sort_value_object.py index ac5a76d..b1cf4f4 100644 --- a/gemmapy/sdk/models/sort_value_object.py +++ b/gemmapy/sdk/models/sort_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/statement_value_object.py b/gemmapy/sdk/models/statement_value_object.py index 2f61f8a..3da34b0 100644 --- a/gemmapy/sdk/models/statement_value_object.py +++ b/gemmapy/sdk/models/statement_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxa.py b/gemmapy/sdk/models/taxa.py index b1def09..91efc30 100644 --- a/gemmapy/sdk/models/taxa.py +++ b/gemmapy/sdk/models/taxa.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon.py b/gemmapy/sdk/models/taxon.py index def3c5e..5abb26b 100644 --- a/gemmapy/sdk/models/taxon.py +++ b/gemmapy/sdk/models/taxon.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon1.py b/gemmapy/sdk/models/taxon1.py index 030cdd0..4b053a5 100644 --- a/gemmapy/sdk/models/taxon1.py +++ b/gemmapy/sdk/models/taxon1.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon10.py b/gemmapy/sdk/models/taxon10.py new file mode 100644 index 0000000..c07aa20 --- /dev/null +++ b/gemmapy/sdk/models/taxon10.py @@ -0,0 +1,84 @@ +# coding: utf-8 + +""" + Gemma RESTful API + + This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 + + OpenAPI spec version: 2.8.0 + Contact: pavlab-support@msl.ubc.ca + Generated by: https://github.com/swagger-api/swagger-codegen.git +""" + +import pprint +import re # noqa: F401 + +import six + +class Taxon10(object): + """NOTE: This class is auto generated by the swagger code generator program. + + Do not edit the class manually. + """ + """ + Attributes: + swagger_types (dict): The key is attribute name + and the value is attribute type. + attribute_map (dict): The key is attribute name + and the value is json key in definition. + """ + swagger_types = { + } + + attribute_map = { + } + + def __init__(self): # noqa: E501 + """Taxon10 - a model defined in Swagger""" # noqa: E501 + self.discriminator = None + + def to_dict(self): + """Returns the model properties as a dict""" + result = {} + + for attr, _ in six.iteritems(self.swagger_types): + value = getattr(self, attr) + if isinstance(value, list): + result[attr] = list(map( + lambda x: x.to_dict() if hasattr(x, "to_dict") else x, + value + )) + elif hasattr(value, "to_dict"): + result[attr] = value.to_dict() + elif isinstance(value, dict): + result[attr] = dict(map( + lambda item: (item[0], item[1].to_dict()) + if hasattr(item[1], "to_dict") else item, + value.items() + )) + else: + result[attr] = value + if issubclass(Taxon10, dict): + for key, value in self.items(): + result[key] = value + + return result + + def to_str(self): + """Returns the string representation of the model""" + return pprint.pformat(self.to_dict()) + + def __repr__(self): + """For `print` and `pprint`""" + return self.to_str() + + def __eq__(self, other): + """Returns true if both objects are equal""" + if not isinstance(other, Taxon10): + return False + + return self.__dict__ == other.__dict__ + + def __ne__(self, other): + """Returns true if both objects are not equal""" + return not self == other diff --git a/gemmapy/sdk/models/taxon2.py b/gemmapy/sdk/models/taxon2.py index 4628f24..4fe2913 100644 --- a/gemmapy/sdk/models/taxon2.py +++ b/gemmapy/sdk/models/taxon2.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon3.py b/gemmapy/sdk/models/taxon3.py index 978700c..93d94b6 100644 --- a/gemmapy/sdk/models/taxon3.py +++ b/gemmapy/sdk/models/taxon3.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon4.py b/gemmapy/sdk/models/taxon4.py index 18b16da..73641ef 100644 --- a/gemmapy/sdk/models/taxon4.py +++ b/gemmapy/sdk/models/taxon4.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon5.py b/gemmapy/sdk/models/taxon5.py index a38de20..f57aee5 100644 --- a/gemmapy/sdk/models/taxon5.py +++ b/gemmapy/sdk/models/taxon5.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon6.py b/gemmapy/sdk/models/taxon6.py index 25c1998..193e6eb 100644 --- a/gemmapy/sdk/models/taxon6.py +++ b/gemmapy/sdk/models/taxon6.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon7.py b/gemmapy/sdk/models/taxon7.py index 585f2bb..0eebed3 100644 --- a/gemmapy/sdk/models/taxon7.py +++ b/gemmapy/sdk/models/taxon7.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon8.py b/gemmapy/sdk/models/taxon8.py index 4bdc573..e909d66 100644 --- a/gemmapy/sdk/models/taxon8.py +++ b/gemmapy/sdk/models/taxon8.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon9.py b/gemmapy/sdk/models/taxon9.py index 529b3c2..ac03fa1 100644 --- a/gemmapy/sdk/models/taxon9.py +++ b/gemmapy/sdk/models/taxon9.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon_arg.py b/gemmapy/sdk/models/taxon_arg.py index b23bd07..60362db 100644 --- a/gemmapy/sdk/models/taxon_arg.py +++ b/gemmapy/sdk/models/taxon_arg.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon_value_object.py b/gemmapy/sdk/models/taxon_value_object.py index 205df47..f42bfed 100644 --- a/gemmapy/sdk/models/taxon_value_object.py +++ b/gemmapy/sdk/models/taxon_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py b/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py index 2c94432..9b1f12b 100644 --- a/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py +++ b/gemmapy/sdk/models/taxon_with_usage_statistics_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/vector_element_value_object.py b/gemmapy/sdk/models/vector_element_value_object.py index dde5c37..d0211ff 100644 --- a/gemmapy/sdk/models/vector_element_value_object.py +++ b/gemmapy/sdk/models/vector_element_value_object.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/models/well_composed_error_body.py b/gemmapy/sdk/models/well_composed_error_body.py index 4625477..0ff6cd5 100644 --- a/gemmapy/sdk/models/well_composed_error_body.py +++ b/gemmapy/sdk/models/well_composed_error_body.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/gemmapy/sdk/rest.py b/gemmapy/sdk/rest.py index 9a572f8..7d48b94 100644 --- a/gemmapy/sdk/rest.py +++ b/gemmapy/sdk/rest.py @@ -5,7 +5,7 @@ This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501 - OpenAPI spec version: 2.7.6 + OpenAPI spec version: 2.8.0 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git """ diff --git a/sdk-gen/generate-sdk.sh b/sdk-gen/generate-sdk.sh index 084b153..8183712 100755 --- a/sdk-gen/generate-sdk.sh +++ b/sdk-gen/generate-sdk.sh @@ -5,7 +5,7 @@ temp_sdk_dir=$(mktemp -d) script_dir=$(dirname "${BASH_SOURCE[0]}") gemmapy_version=$(grep 'version' "$script_dir/../setup.cfg" | sed 's/version = //') echo "Updating openapi.yaml..." -curl https://gemma.msl.ubc.ca/rest/v2/openapi.yaml -o "$script_dir/openapi.yaml" --compressed +curl https://staging-gemma.msl.ubc.ca/rest/v2/openapi.yaml -o "$script_dir/openapi.yaml" --compressed echo "Updating swagger-codegen-cli.jar..." curl "https://repo1.maven.org/maven2/io/swagger/codegen/v3/swagger-codegen-cli/$swagger_version/swagger-codegen-cli-$swagger_version.jar" -o swagger-codegen-cli.jar diff --git a/sdk-gen/openapi.yaml b/sdk-gen/openapi.yaml index 1d3d85b..3c3ce8c 100644 --- a/sdk-gen/openapi.yaml +++ b/sdk-gen/openapi.yaml @@ -14,9 +14,9 @@ info: name: Pavlidis Lab Support url: https://pavlab.msl.ubc.ca/ email: pavlab-support@msl.ubc.ca - version: 2.7.6 + version: 2.8.0 servers: -- url: https://gemma.msl.ubc.ca/rest/v2 +- url: https://staging-gemma.msl.ubc.ca/rest/v2 security: - basicAuth: [] - cookieAuth: [] @@ -125,7 +125,10 @@ paths: in: query explode: false schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -137,7 +140,10 @@ paths: in: query explode: false schema: + minItems: 1 type: array + description: A comma-delimited list of database entry IDs or accessions. + The value may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -177,6 +183,84 @@ paths: application/json: schema: $ref: '#/components/schemas/FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject' + /annotations/children: + get: + summary: Retrieve the children of the given annotations + description: "Terms that are returned satisfies the [inverse of rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms)\ + \ or [has_part](http://purl.obolibrary.org/obo/BFO_0000051) relations. When\ + \ `direct` is set to false, this rule is applied recursively." + operationId: getAnnotationsChildren + parameters: + - name: uri + in: query + description: Term URI + schema: + type: string + - name: direct + in: query + description: Only include direct parents. + schema: + type: boolean + default: false + responses: + default: + content: + application/json: + schema: + type: array + items: + $ref: '#/components/schemas/AnnotationSearchResultValueObject' + "404": + description: No term matched the given URI. + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseErrorObject' + "503": + description: Ontology inference timed out. + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseErrorObject' + /annotations/parents: + get: + summary: Retrieve the parents of the given annotations + description: "Terms that are returned satisfies the [rdfs:subClassOf](https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Subclass_Axioms)\ + \ or [part_of](http://purl.obolibrary.org/obo/BFO_0000050) relations. When\ + \ `direct` is set to false, this rule is applied recursively." + operationId: getAnnotationsParents + parameters: + - name: uri + in: query + description: Term URI + schema: + type: string + - name: direct + in: query + description: Only include direct children. + schema: + type: boolean + default: false + responses: + default: + content: + application/json: + schema: + type: array + items: + $ref: '#/components/schemas/AnnotationSearchResultValueObject' + "404": + description: No term matched the given URI. + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseErrorObject' + "503": + description: Ontology inference timed out. + content: + application/json: + schema: + $ref: '#/components/schemas/ResponseErrorObject' /annotations/search: get: summary: Search for annotation tags @@ -187,6 +271,7 @@ paths: description: A comma-delimited list of keywords to find annotations. explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -225,6 +310,7 @@ paths: required: true explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -257,6 +343,7 @@ paths: datasets for each query are intersected. explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -322,6 +409,7 @@ paths: required: true explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -399,6 +487,7 @@ paths: datasets for each query are intersected. explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -481,6 +570,7 @@ paths: required: true explode: false schema: + minItems: 1 type: array description: A comma-delimited list of strings. The value may be compressed with gzip and encoded with base64. @@ -628,7 +718,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -725,7 +818,7 @@ paths: /datasets/{dataset}/analyses/differential/resultSets: get: summary: Retrieve the result sets of all differential analyses of a dataset - operationId: getDatasetDifferentialExpressionAnalysesResultSets + operationId: getDatasetDifferentialExpressionAnalysisResultSets parameters: - name: dataset in: path @@ -794,7 +887,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -806,7 +902,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: "A comma-delimited list of NCBI IDs, Ensembl IDs or gene symbols.\ + \ The value may be compressed with gzip and encoded with base64." items: oneOf: - type: string @@ -852,7 +951,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -880,7 +982,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: "A comma-delimited list of NCBI IDs, Ensembl IDs or gene symbols.\ + \ The value may be compressed with gzip and encoded with base64." items: oneOf: - type: string @@ -926,7 +1031,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -1263,7 +1371,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of dataset IDs or short names. The value + may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -1343,6 +1454,166 @@ paths: application/json: schema: $ref: '#/components/schemas/ResponseErrorObject' + /datasets/analyses/differential/results/genes/{gene}: + get: + summary: Retrieve the differential expression results for a given gene + description: |- + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. + + If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. + + Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. + operationId: getDatasetsDifferentialExpressionAnalysisResultsForGene + parameters: + - name: gene + in: path + required: true + schema: + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ + - name: query + in: query + schema: + $ref: '#/components/schemas/QueryArg' + - name: filter + in: query + schema: + $ref: '#/components/schemas/FilterArgExpressionExperiment' + - name: offset + in: query + schema: + minimum: 0 + type: integer + description: The offset of the first retrieved result. + format: int32 + - name: limit + in: query + schema: + maximum: 100 + minimum: 1 + type: integer + description: Limit the number of results retrieved. + format: int32 + - name: threshold + in: query + description: Maximum threshold on the corrected P-value to retain a result. + The threshold is inclusive (i.e. 0.05 will match results with corrected + P-values lower or equal to 0.05). + schema: + maximum: 1.0 + minimum: 0.0 + type: number + format: double + default: 1.0 + responses: + default: + content: + application/json: + schema: + $ref: '#/components/schemas/QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject' + text/tab-separated-values; charset=UTF-8: + schema: + type: string + format: binary + /datasets/analyses/differential/results/taxa/{taxon}/genes/{gene}: + get: + summary: Retrieve the differential expression results for a given gene and taxa + description: |- + Pagination with `offset` and `limit` is done on the datasets, thus `data` will hold a variable number of results. + + If a result set has more than one probe for a given gene, the result corresponding to the lowest corrected P-value is retained. This statistic reflects the goodness of the fit of the linear model for the probe, and not the significance of the contrasts. + + Results for non-specific probes (i.e. probes that map to more than one genes) are excluded. + operationId: getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon + parameters: + - name: taxon + in: path + required: true + schema: + oneOf: + - type: integer + description: A numerical taxon identifier. + format: int64 + - type: integer + description: An NCBI taxon identifier. + format: int64 + externalDocs: + url: https://www.ncbi.nlm.nih.gov/taxonomy + - type: string + description: A taxon identifier that matches either its scientific or + common name. + - name: gene + in: path + required: true + schema: + oneOf: + - type: string + description: An Ensembl gene identifier which typically starts with 'ENSG'. + externalDocs: + url: https://www.ensembl.org/ + - type: string + description: An NCBI gene identifier. + externalDocs: + url: https://www.ncbi.nlm.nih.gov/gene + - type: string + description: An official gene symbol approved by HGNC. + externalDocs: + url: https://www.genenames.org/ + - name: query + in: query + schema: + $ref: '#/components/schemas/QueryArg' + - name: filter + in: query + schema: + $ref: '#/components/schemas/FilterArgExpressionExperiment' + - name: offset + in: query + schema: + minimum: 0 + type: integer + description: The offset of the first retrieved result. + format: int32 + - name: limit + in: query + schema: + maximum: 100 + minimum: 1 + type: integer + description: Limit the number of results retrieved. + format: int32 + - name: threshold + in: query + description: Maximum threshold on the corrected P-value to retain a result. + The threshold is inclusive (i.e. 0.05 will match results with corrected + P-values lower or equal to 0.05). + schema: + maximum: 1.0 + minimum: 0.0 + type: number + format: double + default: 1.0 + responses: + default: + content: + application/json: + schema: + $ref: '#/components/schemas/QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject' + text/tab-separated-values; charset=UTF-8: + schema: + type: string + format: binary /datasets/platforms: get: summary: Retrieve usage statistics of platforms among datasets matching the @@ -1553,7 +1824,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: "A comma-delimited list of NCBI IDs, Ensembl IDs or gene symbols.\ + \ The value may be compressed with gzip and encoded with base64." items: oneOf: - type: string @@ -1701,7 +1975,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of element IDs or names. The value may + be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -1867,7 +2144,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: A comma-delimited list of platform IDs or short names. The + value may be compressed with gzip and encoded with base64. items: oneOf: - type: integer @@ -1961,16 +2241,16 @@ paths: items: type: string enum: - - ubic.gemma.model.blacklist.BlacklistedEntity - - ubic.gemma.model.association.phenotype.PhenotypeAssociation - - ubic.gemma.model.expression.designElement.CompositeSequence - ubic.gemma.model.expression.experiment.ExpressionExperiment + - ubic.gemma.model.analysis.expression.ExpressionExperimentSet + - ubic.gemma.model.common.description.BibliographicReference + - ubic.gemma.model.expression.designElement.CompositeSequence - ubic.gemma.model.genome.Gene - ubic.gemma.model.genome.gene.GeneSet - - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - - ubic.gemma.model.genome.biosequence.BioSequence + - ubic.gemma.model.blacklist.BlacklistedEntity + - ubic.gemma.model.association.phenotype.PhenotypeAssociation - ubic.gemma.model.expression.arrayDesign.ArrayDesign - - ubic.gemma.model.common.description.BibliographicReference + - ubic.gemma.model.genome.biosequence.BioSequence - name: limit in: query description: Maximum number of search results to return; capped at 2000 unless @@ -2032,7 +2312,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: "A comma-delimited list of taxon IDs, NCBI IDs, common names\ + \ or scientific names." items: oneOf: - type: integer @@ -2329,7 +2612,10 @@ paths: in: path required: true schema: + minItems: 1 type: array + description: "A comma-delimited list of NCBI IDs, Ensembl IDs or gene symbols.\ + \ The value may be compressed with gzip and encoded with base64." items: oneOf: - type: string @@ -2905,23 +3191,23 @@ components: id: type: integer format: int64 - category: - type: string - categoryUri: + name: type: string description: type: string - factorValues: - type: string - description: "This is deprecated, use `values` directly instead." - deprecated: true - name: - type: string type: type: string enum: - categorical - continuous + category: + type: string + categoryUri: + type: string + factorValues: + type: string + description: "This is deprecated, use `values` directly instead." + deprecated: true values: type: array items: @@ -3568,10 +3854,10 @@ components: type: string detail: type: string - actionName: - type: string eventTypeName: type: string + actionName: + type: string ExpressionExperimentValueObject: type: object properties: @@ -6342,6 +6628,73 @@ components: type: array items: $ref: '#/components/schemas/CharacteristicValueObject' + DifferentialExpressionAnalysisResultByGeneValueObject: + type: object + properties: + id: + type: integer + format: int64 + probeId: + type: integer + format: int64 + probeName: + type: string + genes: + type: array + items: + $ref: '#/components/schemas/GeneValueObject' + correctedPvalue: + type: number + format: double + rank: + type: number + format: double + contrasts: + type: array + items: + $ref: '#/components/schemas/ContrastResultValueObject' + sourceExperimentId: + type: integer + format: int64 + experimentAnalyzedId: + type: integer + format: int64 + resultSetId: + type: integer + format: int64 + pvalue: + type: number + format: double + QueriedAndFilteredAndInferredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultByGeneValueObject: + type: object + properties: + data: + type: array + items: + $ref: '#/components/schemas/DifferentialExpressionAnalysisResultByGeneValueObject' + groupBy: + type: array + items: + type: string + sort: + $ref: '#/components/schemas/SortValueObject' + offset: + type: integer + format: int32 + limit: + type: integer + format: int32 + totalElements: + type: integer + format: int64 + filter: + type: string + query: + type: string + inferredTerms: + type: array + items: + $ref: '#/components/schemas/CharacteristicValueObject' ArrayDesignWithUsageStatisticsValueObject: type: object properties: @@ -7805,16 +8158,16 @@ components: items: type: string enum: - - ubic.gemma.model.blacklist.BlacklistedEntity - - ubic.gemma.model.association.phenotype.PhenotypeAssociation - - ubic.gemma.model.expression.designElement.CompositeSequence - ubic.gemma.model.expression.experiment.ExpressionExperiment + - ubic.gemma.model.analysis.expression.ExpressionExperimentSet + - ubic.gemma.model.common.description.BibliographicReference + - ubic.gemma.model.expression.designElement.CompositeSequence - ubic.gemma.model.genome.Gene - ubic.gemma.model.genome.gene.GeneSet - - ubic.gemma.model.analysis.expression.ExpressionExperimentSet - - ubic.gemma.model.genome.biosequence.BioSequence + - ubic.gemma.model.blacklist.BlacklistedEntity + - ubic.gemma.model.association.phenotype.PhenotypeAssociation - ubic.gemma.model.expression.arrayDesign.ArrayDesign - - ubic.gemma.model.common.description.BibliographicReference + - ubic.gemma.model.genome.biosequence.BioSequence ResponseDataObjectListTaxonValueObject: type: object properties: