Skip to content
CI pipeline for pySDC

TL: first revision for the parallel SDC theory paper (#481) #1923

Sign in to view logs

TL: first revision for the parallel SDC theory paper (#481)

TL: first revision for the parallel SDC theory paper (#481) #1923

Workflow file for this run

.github/workflows/ci_pipeline.yml at 32549d9
---
name: CI pipeline for pySDC
on:
push:
pull_request:
schedule:
- cron: '1 5 * * 1'
jobs:
lint:
runs-on: ubuntu-latest
env:
YML: 'etc/environment-lint.yml'
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v1
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: ${{ env.YML }}
create-args: >-
python=3.12
- name: Code reformatting with black
run: |
black pySDC --check --diff --color
- name: Linting with ruff
run: |
ruff check pySDC
user_cpu_tests_linux:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
env: ['base', 'fenics', 'mpi4py', 'petsc', 'pytorch']
python: ['3.9', '3.10', '3.11', '3.12']
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: "etc/environment-${{ matrix.env }}.yml"
create-args: >-
python=${{ matrix.python }}
- name: Install additional packages as needed
run: |
micromamba install -y --file etc/environment-tests.yml --freeze-installed
- name: Run pytest for CPU stuff
run: |
echo "print('Loading sitecustomize.py...')
import coverage
coverage.process_startup() " > sitecustomize.py
coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/tests -m ${{ matrix.env }}
- name: Make coverage report
run: |
coverage combine
mv .coverage coverage_${{ matrix.env }}.dat
- name: Uploading artifacts
uses: actions/upload-artifact@v4
if: matrix.python == '3.12'
with:
name: test-artifacts-cpu-${{ matrix.env }}
path: |
data
coverage_${{ matrix.env }}.dat
project_cpu_tests_linux:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
env:
- AllenCahn_Bayreuth
- AsympConv
- DAE
- FastWaveSlowWave
- Hamiltonian
- matrixPFASST
- parallelSDC
- parallelSDC_reloaded
- PinTSimE
- RDC
- Resilience
- SDC_showdown
- Second_orderSDC
- soft_failure
- TOMS
python: ['3.9', '3.10', '3.11', '3.12']
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: "pySDC/projects/${{ matrix.env }}/environment.yml"
create-args: >-
python=${{ matrix.python }}
- name: Install additional packages as needed
run: |
micromamba install -y --file etc/environment-tests.yml --freeze-installed
- name: Run pytest for CPU stuff
run: |
echo "print('Loading sitecustomize.py...')
import coverage
coverage.process_startup() " > sitecustomize.py
coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/${{ matrix.env }}/tests
- name: Make coverage report
run: |
coverage combine
mv .coverage coverage_${{ matrix.env }}.dat
- name: Uploading artifacts
uses: actions/upload-artifact@v4
if: matrix.python == '3.12'
with:
name: test-artifacts-project-${{ matrix.env }}
path: |
data
coverage_${{ matrix.env }}.dat
user_libpressio_tests:
runs-on: ubuntu-latest
container:
image: brownbaerchen/libpressio:amd64_2
volumes:
- ${{ github.workspace }}:/pySDC
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install pySDC and pytest
run: |
source /pySDC/pySDC/projects/compression/Docker/install_pySDC.sh
- name: Run pytest
run: |
source /opt/spack/share/spack/setup-env.sh
spack load libpressio
coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/compression/tests -m libpressio
- name: Make coverage report
run: |
source /opt/spack/share/spack/setup-env.sh
spack load libpressio
mv data data_libpressio
coverage combine
mv .coverage coverage_libpressio.dat
- name: Upload artifacts
uses: actions/upload-artifact@v4
with:
name: test-artifacts-libpressio
path: |
data_libpressio
coverage_libpressio.dat
user_monodomain_tests_linux:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Install Conda environment with Micromamba
uses: mamba-org/setup-micromamba@v1
with:
environment-file: "pySDC/projects/Monodomain/etc/environment-monodomain.yml"
create-args: >-
python=3.12
- name: Compile C++ ionic models
env:
IONIC_MODELS_PATH: "pySDC/projects/Monodomain/problem_classes/ionicmodels/cpp"
run: >
c++ -O3 -Wall -shared -std=c++11 -fPIC -fvisibility=hidden
$(python3 -m pybind11 --includes)
${IONIC_MODELS_PATH}/bindings_definitions.cpp
-o ${IONIC_MODELS_PATH}/ionicmodels$(python3-config --extension-suffix)
- name: Run pytest for CPU stuff
run: |
echo "print('Loading sitecustomize.py...')
import coverage
coverage.process_startup() " > sitecustomize.py
coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/Monodomain/tests -m monodomain
- name: Make coverage report
run: |
mv data data_monodomain
coverage combine
mv .coverage coverage_monodomain.dat
- name: Uploading artifacts
uses: actions/upload-artifact@v4
with:
name: test-artifacts-monodomain
path: |
data_monodomain
coverage_monodomain.dat