From 63d8272898a9d7468f3423ce3f84b3f875ced3a9 Mon Sep 17 00:00:00 2001 From: KL Weber Date: Fri, 17 Feb 2023 04:40:38 -0500 Subject: [PATCH] Update memory.md for new flag names (#15) output-handles instead of bam-handles (applies at least since lima 2.7.1) --- docs/faq/memory.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/faq/memory.md b/docs/faq/memory.md index 5fcb18b..23c7675 100644 --- a/docs/faq/memory.md +++ b/docs/faq/memory.md @@ -13,10 +13,10 @@ In this case, memory usage (RES column in top) is approximately the size of the input, uncompressed. The maximum concurrent output BAM file handles can be adjusted with -`--bam-handles N`. The default is 500. +`--bam-handles N` or `--output-handles N`. The default is 500. Examples, how memory usage is affected by `--bam-handles`. Option -`--bam-handles-verbose` is only used to visualize the BAM output file handles. +`--bam-handles-verbose` or `--output-handles-verbose` is only used to visualize the BAM output file handles. Memory usage reported using [memusg](https://gist.github.com/netj/526585): $ lima input.bam barcodes.fasta out.bam --same --split-bam --bam-handles 9 --bam-handles-verbose