From 5b3ae841506e00a18119c6dd17588979ec923e2a Mon Sep 17 00:00:00 2001
From: Hani Jieun Kim <hani.kim127@gmail.com>
Date: Mon, 24 Jun 2024 23:47:43 +1000
Subject: [PATCH] bioc check

---
 vignettes/cepo.Rmd | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/vignettes/cepo.Rmd b/vignettes/cepo.Rmd
index 52c2b2b..935ae07 100644
--- a/vignettes/cepo.Rmd
+++ b/vignettes/cepo.Rmd
@@ -291,7 +291,7 @@ hallmarkList <- getGeneSets(species = "Homo sapiens",
                            library = "H")
 
 fgseaRes <- fgsea(pathways = hallmarkList, 
-                  stats    = sort(ds_res_batches$average$stats[,"beta"]),
+                  stats    = sort(as.data.frame(ds_res_batches$average$stats)$beta),
                   minSize = 15,
                   maxSize = 500)