DESCRIPTION

Package: Cepo
Title: Cepo for the identification of differentially stable genes
Version: 1.11.2
Authors@R: 
    c(
    person(given = "Hani Jieun",
           family = "Kim",
           role = c("aut", "cre"),
           email = "hani.kim127@gmail.com",
           comment = c(ORCID = "0000-0003-1844-3275")),
    person(given = "Kevin",
           family = "Wang",
           role = c("aut"),
           email = "kevinwangstats@gmail.com",
           comment = c(ORCID = "0000-0003-2615-6102"))
    )
Description: Defining the identity of a cell is fundamental to understand the heterogeneity of cells to various environmental signals and perturbations. We present Cepo, a new method to explore cell identities from single-cell RNA-sequencing data using differential stability as a new metric to define cell identity genes. Cepo computes cell-type specific gene statistics pertaining to differential stable gene expression.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports: 
    DelayedMatrixStats,
    DelayedArray,
    HDF5Array,
    S4Vectors,
    methods,
    SingleCellExperiment,
    SummarizedExperiment,
    ggplot2,
    rlang,
    grDevices,
    patchwork,
    reshape2,
    BiocParallel,
    stats,
    dplyr,
    purrr
biocViews: Classification, GeneExpression, SingleCell, Software, Sequencing, DifferentialExpression
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    testthat,
    covr,
    UpSetR,
    scater,
    scMerge,
    fgsea,
    escape,
    pheatmap
VignetteBuilder: knitr
Depends: 
    GSEABase,
    R (>= 4.1)