setup.py

from setuptools import setup, find_packages

# Version information is found in the __init__ file of `janis/`
DESCRIPTION = "Contains classes and helpers to build a workflow, and provide options to convert to CWL / WDL"

JANIS_CORE_VERSION = "v0.13.1"
JANIS_ASSISTANT_VERSION = "v0.13.0"
JANIS_UNIX_VERSION = "v0.12.0"
JANIS_BIOINFORMATICS_VERSION = "v0.12.2"
JANIS_PIPELINES_VERSION = "v0.13.0"
JANIS_TEMPLATES_VERSION = "v0.12.0"

######## SHOULDN'T NEED EDITS BELOW THIS LINE ########
fixed_core_version = f"janis-pipelines.core==" + JANIS_CORE_VERSION
fixed_assistant_version = f"janis-pipelines.runner==" + JANIS_ASSISTANT_VERSION
fixed_unix_version = f"janis-pipelines.unix==" + JANIS_UNIX_VERSION
fixed_bioinf_version = (
    f"janis-pipelines.bioinformatics==" + JANIS_BIOINFORMATICS_VERSION
)
fixed_pipes_version = f"janis-pipelines.pipelines==" + JANIS_PIPELINES_VERSION
fixed_templs_version = f"janis-pipelines.templates==" + JANIS_TEMPLATES_VERSION

with open("./README.md") as readme:
    long_description = readme.read()

vsn = {}
with open("./janis/__meta__.py") as fp:
    exec(fp.read(), vsn)
__version__ = vsn["__version__"]
githuburl = vsn["GITHUB_URL"]

modules = ["janis_assistant." + p for p in sorted(find_packages("./janis_assistant"))]


fixed_unix_version = f"janis-pipelines.unix==" + JANIS_UNIX_VERSION
setup(
    name="janis-pipelines",
    version=__version__,
    description=DESCRIPTION,
    url=githuburl,
    author="Michael Franklin, Richard Lupat",
    author_email="michael.franklin@petermac.org",
    license="GNU",
    keywords=["pipelines", "bioinformatics"],
    packages=["janis", "janisdk"]
    + ["janis." + p for p in sorted(find_packages("./janis"))]
    + ["janisdk." + p for p in sorted(find_packages("./janisdk"))],
    install_requires=[
        fixed_core_version,
        fixed_assistant_version,
        fixed_unix_version,
        fixed_bioinf_version,
        fixed_pipes_version,
        fixed_templs_version,
    ],
    extras_require={
        "bioinformatics": [fixed_bioinf_version, fixed_pipes_version],
        "doc": ["docutils", "sphinx", "sphinx_rtd_theme", "recommonmark"],
        "ci": [
            "keyring==21.4.0",
            "setuptools",
            "wheel",
            "twine",
        ],
    },
    entry_points={"console_scripts": ["janisdk=janisdk.main:process_args"]},
    zip_safe=False,
    long_description=long_description,
    long_description_content_type="text/markdown",
    classifiers=[
        "Development Status :: 2 - Pre-Alpha",
        "Intended Audience :: Developers",
        "Intended Audience :: Science/Research",
        "Topic :: Scientific/Engineering",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
    ],
)