This Python package contains:
- CLI applications to download scoring files from the PGS Catalog and normalise them into a consistent structure
- core library classes and functions for working with PGS data
| Application | Description | Link |
|---|---|---|
pgscatalog-download |
Download scoring files from the PGS Catalog in specific genome builds | README |
pgscatalog-combine |
Combine multiple scoring files into a consistent structure | README |
pgscatalog-relabel |
Relabel values in a column based on values in a column in another file | README |
If you want to write Python code to work with PGS data, the library may be helpful for you.
If you want to do automatic PGS calculation check out the PGS Catalog Calculator, which uses these tools internally.
or install via pip:
$ pipx install pgscatalog.core
Documentation is available at https://pygscatalog.readthedocs.io/.