diff --git a/petabtests/cases/v1.0.0/sbml/0005/0005.py b/petabtests/cases/v1.0.0/sbml/0005/0005.py
index de50943..08164ec 100644
--- a/petabtests/cases/v1.0.0/sbml/0005/0005.py
+++ b/petabtests/cases/v1.0.0/sbml/0005/0005.py
@@ -33,7 +33,6 @@
A = a0;
B = b0;
- B = 1;
a0 = 1;
b0 = 1;
k1 = 0;
@@ -53,10 +52,10 @@
measurement_df = pd.DataFrame(
data={
- OBSERVABLE_ID: ["obs_a", "obs_a"],
- SIMULATION_CONDITION_ID: ["c0", "c1"],
- TIME: [10, 10],
- MEASUREMENT: [2.1, 3.2],
+ OBSERVABLE_ID: ["obs_a", "obs_a", "obs_a", "obs_a"],
+ SIMULATION_CONDITION_ID: ["c0", "c1", "c0", "c1"],
+ TIME: [0, 0, 10, 10],
+ MEASUREMENT: [2.0, 2.0, 2.1, 3.2],
}
)
@@ -85,7 +84,8 @@
columns={MEASUREMENT: SIMULATION}
)
simulation_df[SIMULATION] = [
- analytical_a(10, 1, 0, 0.8, 0.6) + offset for offset in [2, 3]
+ *(analytical_a(0, 1, 0, 0.8, 0.6) + offset for offset in [2, 3]),
+ *(analytical_a(10, 1, 0, 0.8, 0.6) + offset for offset in [2, 3]),
]
case = PetabTestCase(
diff --git a/petabtests/cases/v1.0.0/sbml/0005/_0005_solution.yaml b/petabtests/cases/v1.0.0/sbml/0005/_0005_solution.yaml
index 5f6c46b..428d6ca 100644
--- a/petabtests/cases/v1.0.0/sbml/0005/_0005_solution.yaml
+++ b/petabtests/cases/v1.0.0/sbml/0005/_0005_solution.yaml
@@ -1,5 +1,5 @@
-chi2: 0.16020461109629
-llh: -1.91797937195749
+chi2: 5.16020461109629
+llh: -6.25585643836683
simulation_files:
- _simulations.tsv
tol_chi2: 0.001
diff --git a/petabtests/cases/v1.0.0/sbml/0005/_measurements.tsv b/petabtests/cases/v1.0.0/sbml/0005/_measurements.tsv
index 6016b73..57f0cac 100644
--- a/petabtests/cases/v1.0.0/sbml/0005/_measurements.tsv
+++ b/petabtests/cases/v1.0.0/sbml/0005/_measurements.tsv
@@ -1,3 +1,5 @@
observableId simulationConditionId time measurement
+obs_a c0 0 2.0
+obs_a c1 0 2.0
obs_a c0 10 2.1
obs_a c1 10 3.2
diff --git a/petabtests/cases/v1.0.0/sbml/0005/_model.xml b/petabtests/cases/v1.0.0/sbml/0005/_model.xml
index 5e9270a..0c56134 100644
--- a/petabtests/cases/v1.0.0/sbml/0005/_model.xml
+++ b/petabtests/cases/v1.0.0/sbml/0005/_model.xml
@@ -7,7 +7,7 @@
-
+
@@ -22,6 +22,11 @@
a0
+
+
+
diff --git a/petabtests/cases/v1.0.0/sbml/0005/_simulations.tsv b/petabtests/cases/v1.0.0/sbml/0005/_simulations.tsv
index 3fb757b..c0b6ecd 100644
--- a/petabtests/cases/v1.0.0/sbml/0005/_simulations.tsv
+++ b/petabtests/cases/v1.0.0/sbml/0005/_simulations.tsv
@@ -1,3 +1,5 @@
observableId simulationConditionId time simulation
+obs_a c0 0 3.0
+obs_a c1 0 4.0
obs_a c0 10 2.4285719037306968
obs_a c1 10 3.4285719037306968