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Prettify/populate sphinx-doc #95

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dweindl opened this issue Oct 7, 2024 · 2 comments · Fixed by #105
Closed
4 tasks done

Prettify/populate sphinx-doc #95

dweindl opened this issue Oct 7, 2024 · 2 comments · Fixed by #105
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fixed in next release This issue is resolved and will be available in the next version.

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dweindl commented Oct 7, 2024 •
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https://petab-select.readthedocs.io/en/develop/ still needs some work

  • nicer landing page
  • petab-select input files File formats to RTD #102
  • link to pypesto integration example
  • link to other tools supporting petab-select
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dweindl commented Oct 8, 2024

@dilpath : do you prefer having File formats and Test cases only on readthedocs, or README+readthedocs?

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dilpath commented Oct 8, 2024

I would prefer having it on readthedocs only

@dweindl dweindl self-assigned this Oct 15, 2024
dweindl added a commit that referenced this issue Oct 15, 2024
@dweindl
Move test suite description to RTD
6b440ed 
Related to #95.
@dweindl dweindl mentioned this issue Oct 15, 2024
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dweindl added a commit that referenced this issue Oct 15, 2024
@dweindl
File formats to RTD
0f5f767 
Related to #95.
@dweindl dweindl mentioned this issue Oct 15, 2024
Merged
dweindl added a commit that referenced this issue Oct 15, 2024
@dweindl
Move test suite description to RTD
a1680a3 
Related to #95.
dweindl added a commit that referenced this issue Oct 15, 2024
@dweindl
Move test suite description to RTD (#101)
473e61e 
Related to #95.
dweindl added a commit that referenced this issue Nov 12, 2024
@dweindl
Doc: Update RTD landing page
56f16d9 
Add a bit of content. #95.
@dweindl dweindl mentioned this issue Nov 12, 2024
Merged
dweindl added a commit that referenced this issue Nov 12, 2024
@dweindl @dilpath
Doc: Update RTD landing page (#105)
ec9a5a6 
* Doc: Update RTD landing page

Add a bit of content. #95.

* Apply suggestions from code review

Co-authored-by: Dilan Pathirana <[email protected]>

* Formatting, spelling, links

---------

Co-authored-by: Dilan Pathirana <[email protected]>
@dweindl dweindl linked a pull request Nov 12, 2024 that will close this issue
Doc: Update RTD landing page #105
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@dilpath dilpath added the fixed in next release This issue is resolved and will be available in the next version. label Nov 12, 2024
dilpath added a commit that referenced this issue Nov 18, 2024
@dilpath @dweindl
Release v0.2.0
29aff05 
* make model hashes nicer; add model hash to model method

* :class:`ModelHash`

* support user-supplied models with no specified subspace

* Skip virtual models in `models_to_yaml_list` (#66)

* Action updates via dependabot (#92)

* GHA: Add PyPI deployment workflow (#91)

Related to #89

* Fix minimum Python requirement (#97)

petab requires python>=3.10

* Doc: Fix heading levels in example (#96)



Fixes the sphinx TOC and a typo.

* Get rid of petab DeprecationWarnings (#93)

Closes #90

* README.md: PyPI badge

* Add some docs; ensure similar PEtab problems in distance calculation (#67)

* File formats to RTD (#102)

* Move test suite description to RTD (#101)

Related to #95.

* User-calibrated models (#87)

* compute safe petab hash digest size; support custom digest size; refactor `CandidateSpace` excluded hashes; add `end_iteration`; rename `candidates`->`start_iteration`; change workflow as described in changelog

* `ModelHash.__eq__`: support comparisons with `str` and partial hashes

* repro: narrow bounds in test cases 1-8

* Add logo draft (#103)

* add to RTD, closes #88

* Set up `setuptools_scm` (#100)

Set up `setuptools_scm` and move most package configuration to `pyproject.toml`.

Move git-based package URLs out of `pyproject.toml` (otherwise, PyPI upload will fail).


Co-authored-by: Dilan Pathirana <[email protected]>

* Doc: Update RTD landing page (#105)

* Doc: Update RTD landing page

Add a bit of content. #95.

* Apply suggestions from code review

Co-authored-by: Dilan Pathirana <[email protected]>

* Formatting, spelling, links

---------

Co-authored-by: Dilan Pathirana <[email protected]>

* Switch from black/isort/... to ruff (#99)

Replace black/isort/... by ruff. Run `pre-commit run --all-files`.

Some additional rules should be enabled, but that will require additional effort.


---------

Co-authored-by: Dilan Pathirana <[email protected]>

* Update file format spec (#106)

* add example to model space, to clarify compressed format

Co-authored-by: Daniel Weindl <[email protected]>

* Doc: fix list formatting (#107)

* test case 0009: update predecessor model

* Visualization methods (#36)

* closes #104

---------

Co-authored-by: Daniel Weindl <[email protected]>
Co-authored-by: Daniel Weindl <[email protected]>

* Support SSR as criterion (#108)

* closes #44

* changelog

---------

Co-authored-by: Dilan Pathirana <[email protected]>
Co-authored-by: Daniel Weindl <[email protected]>
Co-authored-by: Daniel Weindl <[email protected]>
@dweindl dweindl closed this as completed Nov 19, 2024
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Doc: Update RTD landing page PEtab-dev/petab_select
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